Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
SLC44A3Q8N4M1 AL117328.2-201ENST00000624617 1940 ntBASIC20.38■□□□□ 0.85
SLC44A3Q8N4M1 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
SLC44A3Q8N4M1 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC20.38■□□□□ 0.85
SLC44A3Q8N4M1 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC20.38■□□□□ 0.85
SLC44A3Q8N4M1 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SLC44A3Q8N4M1 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC20.38■□□□□ 0.85
SLC44A3Q8N4M1 AC131212.4-201ENST00000623606 975 ntBASIC20.38■□□□□ 0.85
SLC44A3Q8N4M1 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.38■□□□□ 0.85
SLC44A3Q8N4M1 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SLC44A3Q8N4M1 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SLC44A3Q8N4M1 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SLC44A3Q8N4M1 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SLC44A3Q8N4M1 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SLC44A3Q8N4M1 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SLC44A3Q8N4M1 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SLC44A3Q8N4M1 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SLC44A3Q8N4M1 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SLC44A3Q8N4M1 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SLC44A3Q8N4M1 ISCU-203ENST00000431221 799 ntTSL 2 BASIC20.37■□□□□ 0.85
SLC44A3Q8N4M1 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC20.37■□□□□ 0.85
SLC44A3Q8N4M1 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SLC44A3Q8N4M1 NMU-205ENST00000511469 756 ntTSL 3 BASIC20.37■□□□□ 0.85
SLC44A3Q8N4M1 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SLC44A3Q8N4M1 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SLC44A3Q8N4M1 CLDN5-201ENST00000403084 2357 ntBASIC20.37■□□□□ 0.85
SLC44A3Q8N4M1 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
SLC44A3Q8N4M1 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC20.37■□□□□ 0.85
SLC44A3Q8N4M1 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SLC44A3Q8N4M1 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SLC44A3Q8N4M1 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SLC44A3Q8N4M1 H19-201ENST00000411754 1788 ntTSL 5 BASIC20.36■□□□□ 0.85
SLC44A3Q8N4M1 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SLC44A3Q8N4M1 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SLC44A3Q8N4M1 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SLC44A3Q8N4M1 STK25-204ENST00000405585 1643 ntTSL 2 BASIC20.36■□□□□ 0.85
SLC44A3Q8N4M1 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SLC44A3Q8N4M1 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SLC44A3Q8N4M1 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SLC44A3Q8N4M1 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SLC44A3Q8N4M1 AC117947.1-201ENST00000427448 529 ntBASIC20.36■□□□□ 0.85
SLC44A3Q8N4M1 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC20.36■□□□□ 0.85
SLC44A3Q8N4M1 AC091390.4-202ENST00000476426 537 ntBASIC20.36■□□□□ 0.85
SLC44A3Q8N4M1 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC20.36■□□□□ 0.85
SLC44A3Q8N4M1 FDX2-206ENST00000492239 773 ntTSL 2 BASIC20.36■□□□□ 0.85
SLC44A3Q8N4M1 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC20.36■□□□□ 0.85
SLC44A3Q8N4M1 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC20.36■□□□□ 0.85
SLC44A3Q8N4M1 AC130371.2-201ENST00000619443 611 ntBASIC20.36■□□□□ 0.85
SLC44A3Q8N4M1 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
SLC44A3Q8N4M1 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SLC44A3Q8N4M1 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
SLC44A3Q8N4M1 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
SLC44A3Q8N4M1 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.36■□□□□ 0.85
SLC44A3Q8N4M1 MED25-212ENST00000618715 1467 ntTSL 5 BASIC20.36■□□□□ 0.85
SLC44A3Q8N4M1 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC20.36■□□□□ 0.85
SLC44A3Q8N4M1 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
SLC44A3Q8N4M1 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.35■□□□□ 0.85
SLC44A3Q8N4M1 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SLC44A3Q8N4M1 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SLC44A3Q8N4M1 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SLC44A3Q8N4M1 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SLC44A3Q8N4M1 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
SLC44A3Q8N4M1 SLC25A1P4-201ENST00000567977 778 ntBASIC20.35■□□□□ 0.85
SLC44A3Q8N4M1 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC20.35■□□□□ 0.85
SLC44A3Q8N4M1 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC20.35■□□□□ 0.85
SLC44A3Q8N4M1 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC20.35■□□□□ 0.85
SLC44A3Q8N4M1 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
SLC44A3Q8N4M1 ECEL1P1-201ENST00000373592 1742 ntBASIC20.35■□□□□ 0.85
SLC44A3Q8N4M1 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SLC44A3Q8N4M1 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC20.35■□□□□ 0.85
SLC44A3Q8N4M1 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC20.35■□□□□ 0.85
SLC44A3Q8N4M1 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
SLC44A3Q8N4M1 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC20.35■□□□□ 0.85
SLC44A3Q8N4M1 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.34■□□□□ 0.85
SLC44A3Q8N4M1 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC20.34■□□□□ 0.85
SLC44A3Q8N4M1 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
SLC44A3Q8N4M1 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.34■□□□□ 0.85
SLC44A3Q8N4M1 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SLC44A3Q8N4M1 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SLC44A3Q8N4M1 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.34■□□□□ 0.85
SLC44A3Q8N4M1 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
SLC44A3Q8N4M1 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SLC44A3Q8N4M1 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
SLC44A3Q8N4M1 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
SLC44A3Q8N4M1 COPE-203ENST00000351079 907 ntTSL 2 BASIC20.34■□□□□ 0.85
SLC44A3Q8N4M1 FAM8A6P-201ENST00000407496 1135 ntBASIC20.34■□□□□ 0.85
SLC44A3Q8N4M1 HMGA1P5-201ENST00000412453 271 ntBASIC20.34■□□□□ 0.85
SLC44A3Q8N4M1 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SLC44A3Q8N4M1 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SLC44A3Q8N4M1 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC20.34■□□□□ 0.85
SLC44A3Q8N4M1 MYC-208ENST00000641036 567 ntBASIC20.34■□□□□ 0.85
SLC44A3Q8N4M1 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SLC44A3Q8N4M1 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.34■□□□□ 0.85
SLC44A3Q8N4M1 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SLC44A3Q8N4M1 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SLC44A3Q8N4M1 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SLC44A3Q8N4M1 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SLC44A3Q8N4M1 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SLC44A3Q8N4M1 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
SLC44A3Q8N4M1 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms