Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC58Q4VC31 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC58Q4VC31 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC17.68■□□□□ 0.42
CCDC58Q4VC31 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC58Q4VC31 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC58Q4VC31 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC58Q4VC31 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC58Q4VC31 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CCDC58Q4VC31 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC58Q4VC31 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC58Q4VC31 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC58Q4VC31 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
CCDC58Q4VC31 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC58Q4VC31 PEMT-206ENST00000435340 960 ntTSL 5 BASIC17.68■□□□□ 0.42
CCDC58Q4VC31 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC58Q4VC31 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC58Q4VC31 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CCDC58Q4VC31 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC58Q4VC31 AC093484.2-201ENST00000580996 2166 ntBASIC17.68■□□□□ 0.42
CCDC58Q4VC31 AL031432.3-201ENST00000607698 485 ntBASIC17.68■□□□□ 0.42
CCDC58Q4VC31 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC58Q4VC31 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC58Q4VC31 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC58Q4VC31 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC58Q4VC31 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
CCDC58Q4VC31 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC17.68■□□□□ 0.42
CCDC58Q4VC31 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC58Q4VC31 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC17.68■□□□□ 0.42
CCDC58Q4VC31 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC58Q4VC31 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC58Q4VC31 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC58Q4VC31 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC17.68■□□□□ 0.42
CCDC58Q4VC31 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CCDC58Q4VC31 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC58Q4VC31 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC58Q4VC31 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC58Q4VC31 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC58Q4VC31 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC58Q4VC31 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC58Q4VC31 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC58Q4VC31 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CCDC58Q4VC31 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC58Q4VC31 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC58Q4VC31 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC58Q4VC31 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC58Q4VC31 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC17.67■□□□□ 0.42
CCDC58Q4VC31 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC17.67■□□□□ 0.42
CCDC58Q4VC31 AC105265.2-201ENST00000467189 838 ntBASIC17.67■□□□□ 0.42
CCDC58Q4VC31 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC17.67■□□□□ 0.42
CCDC58Q4VC31 CD44-222ENST00000526025 1052 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC58Q4VC31 SLC7A5P1-201ENST00000568957 537 ntBASIC17.67■□□□□ 0.42
CCDC58Q4VC31 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC58Q4VC31 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC58Q4VC31 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CCDC58Q4VC31 AP001160.3-201ENST00000601484 763 ntBASIC17.67■□□□□ 0.42
CCDC58Q4VC31 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC58Q4VC31 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC58Q4VC31 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
CCDC58Q4VC31 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC58Q4VC31 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC58Q4VC31 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC17.67■□□□□ 0.42
CCDC58Q4VC31 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC58Q4VC31 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC58Q4VC31 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
CCDC58Q4VC31 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC58Q4VC31 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC58Q4VC31 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC58Q4VC31 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC58Q4VC31 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC58Q4VC31 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC58Q4VC31 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC58Q4VC31 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
CCDC58Q4VC31 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC58Q4VC31 RBM17P2-201ENST00000616397 1405 ntBASIC17.66■□□□□ 0.42
CCDC58Q4VC31 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC58Q4VC31 GOLGA2P11-201ENST00000562660 1621 ntBASIC17.66■□□□□ 0.42
CCDC58Q4VC31 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC58Q4VC31 AL133373.2-201ENST00000623187 2828 ntBASIC17.66■□□□□ 0.42
CCDC58Q4VC31 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC58Q4VC31 PGM5P4-201ENST00000421970 445 ntBASIC17.66■□□□□ 0.42
CCDC58Q4VC31 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
CCDC58Q4VC31 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC58Q4VC31 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC17.66■□□□□ 0.42
CCDC58Q4VC31 AC104187.1-201ENST00000607510 612 ntBASIC17.66■□□□□ 0.42
CCDC58Q4VC31 AC131212.1-201ENST00000613771 668 ntBASIC17.66■□□□□ 0.42
CCDC58Q4VC31 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC58Q4VC31 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC58Q4VC31 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC58Q4VC31 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC17.66■□□□□ 0.42
CCDC58Q4VC31 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC58Q4VC31 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CCDC58Q4VC31 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC58Q4VC31 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC58Q4VC31 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC58Q4VC31 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC58Q4VC31 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC58Q4VC31 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
CCDC58Q4VC31 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC58Q4VC31 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC58Q4VC31 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms