Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC24.43■■□□□ 1.5
CCDC88AQ3V6T2 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CCDC88AQ3V6T2 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
CCDC88AQ3V6T2 TSPY14P-201ENST00000303979 915 ntBASIC24.43■■□□□ 1.5
CCDC88AQ3V6T2 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC24.43■■□□□ 1.5
CCDC88AQ3V6T2 AC011506.1-201ENST00000474329 610 ntBASIC24.43■■□□□ 1.5
CCDC88AQ3V6T2 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC24.43■■□□□ 1.5
CCDC88AQ3V6T2 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC24.43■■□□□ 1.5
CCDC88AQ3V6T2 AC093458.2-201ENST00000623150 629 ntBASIC24.43■■□□□ 1.5
CCDC88AQ3V6T2 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC24.42■■□□□ 1.5
CCDC88AQ3V6T2 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC24.42■■□□□ 1.5
CCDC88AQ3V6T2 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
CCDC88AQ3V6T2 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
CCDC88AQ3V6T2 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
CCDC88AQ3V6T2 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
CCDC88AQ3V6T2 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CCDC88AQ3V6T2 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.5
CCDC88AQ3V6T2 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
CCDC88AQ3V6T2 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC24.42■■□□□ 1.5
CCDC88AQ3V6T2 HCG4P8-203ENST00000443049 980 ntBASIC24.42■■□□□ 1.5
CCDC88AQ3V6T2 FDX2-206ENST00000492239 773 ntTSL 2 BASIC24.42■■□□□ 1.5
CCDC88AQ3V6T2 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC24.41■■□□□ 1.5
CCDC88AQ3V6T2 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
CCDC88AQ3V6T2 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC24.41■■□□□ 1.5
CCDC88AQ3V6T2 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
CCDC88AQ3V6T2 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC24.41■■□□□ 1.5
CCDC88AQ3V6T2 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CCDC88AQ3V6T2 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CCDC88AQ3V6T2 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CCDC88AQ3V6T2 HMGA1P5-201ENST00000412453 271 ntBASIC24.41■■□□□ 1.5
CCDC88AQ3V6T2 B3GAT3P1-201ENST00000471720 806 ntBASIC24.41■■□□□ 1.5
CCDC88AQ3V6T2 CLN6-204ENST00000564752 900 ntTSL 3 BASIC24.41■■□□□ 1.5
CCDC88AQ3V6T2 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC24.41■■□□□ 1.5
CCDC88AQ3V6T2 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC24.41■■□□□ 1.5
CCDC88AQ3V6T2 AC083849.1-201ENST00000615227 514 ntBASIC24.41■■□□□ 1.5
CCDC88AQ3V6T2 CLN6-214ENST00000636314 442 ntTSL 3 BASIC24.41■■□□□ 1.5
CCDC88AQ3V6T2 WWC2-AS2-201ENST00000578387 2183 ntBASIC24.41■■□□□ 1.5
CCDC88AQ3V6T2 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
CCDC88AQ3V6T2 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC24.41■■□□□ 1.5
CCDC88AQ3V6T2 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC24.41■■□□□ 1.5
CCDC88AQ3V6T2 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
CCDC88AQ3V6T2 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
CCDC88AQ3V6T2 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC24.41■■□□□ 1.5
CCDC88AQ3V6T2 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
CCDC88AQ3V6T2 AC069148.1-201ENST00000608741 768 ntBASIC24.41■■□□□ 1.5
CCDC88AQ3V6T2 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC24.41■■□□□ 1.5
CCDC88AQ3V6T2 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CCDC88AQ3V6T2 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC24.4■■□□□ 1.5
CCDC88AQ3V6T2 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CCDC88AQ3V6T2 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CCDC88AQ3V6T2 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC24.4■■□□□ 1.5
CCDC88AQ3V6T2 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC24.4■■□□□ 1.5
CCDC88AQ3V6T2 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CCDC88AQ3V6T2 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CCDC88AQ3V6T2 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
CCDC88AQ3V6T2 PPP1R14BP5-201ENST00000440334 435 ntBASIC24.4■■□□□ 1.5
CCDC88AQ3V6T2 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
CCDC88AQ3V6T2 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC24.4■■□□□ 1.5
CCDC88AQ3V6T2 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC24.4■■□□□ 1.5
CCDC88AQ3V6T2 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
CCDC88AQ3V6T2 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC24.4■■□□□ 1.5
CCDC88AQ3V6T2 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
CCDC88AQ3V6T2 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
CCDC88AQ3V6T2 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
CCDC88AQ3V6T2 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
CCDC88AQ3V6T2 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC24.39■■□□□ 1.5
CCDC88AQ3V6T2 AL450487.1-201ENST00000426799 995 ntBASIC24.39■■□□□ 1.5
CCDC88AQ3V6T2 SAPCD2P2-201ENST00000431719 1174 ntBASIC24.39■■□□□ 1.5
CCDC88AQ3V6T2 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC24.39■■□□□ 1.5
CCDC88AQ3V6T2 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC24.39■■□□□ 1.5
CCDC88AQ3V6T2 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.5
CCDC88AQ3V6T2 GRAMD4P8-201ENST00000605465 1115 ntBASIC24.39■■□□□ 1.5
CCDC88AQ3V6T2 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
CCDC88AQ3V6T2 AC026310.3-201ENST00000625186 2373 ntBASIC24.39■■□□□ 1.49
CCDC88AQ3V6T2 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC24.39■■□□□ 1.49
CCDC88AQ3V6T2 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
CCDC88AQ3V6T2 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
CCDC88AQ3V6T2 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC24.39■■□□□ 1.49
CCDC88AQ3V6T2 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC24.38■■□□□ 1.49
CCDC88AQ3V6T2 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
CCDC88AQ3V6T2 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
CCDC88AQ3V6T2 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC24.38■■□□□ 1.49
CCDC88AQ3V6T2 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC24.38■■□□□ 1.49
CCDC88AQ3V6T2 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CCDC88AQ3V6T2 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC24.38■■□□□ 1.49
CCDC88AQ3V6T2 AC005332.1-201ENST00000577698 1310 ntBASIC24.38■■□□□ 1.49
CCDC88AQ3V6T2 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC24.38■■□□□ 1.49
CCDC88AQ3V6T2 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC24.38■■□□□ 1.49
CCDC88AQ3V6T2 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CCDC88AQ3V6T2 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
CCDC88AQ3V6T2 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CCDC88AQ3V6T2 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CCDC88AQ3V6T2 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC24.38■■□□□ 1.49
CCDC88AQ3V6T2 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC24.38■■□□□ 1.49
CCDC88AQ3V6T2 SLC25A1P4-201ENST00000567977 778 ntBASIC24.38■■□□□ 1.49
CCDC88AQ3V6T2 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC24.38■■□□□ 1.49
CCDC88AQ3V6T2 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC24.38■■□□□ 1.49
CCDC88AQ3V6T2 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
CCDC88AQ3V6T2 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC24.38■■□□□ 1.49
CCDC88AQ3V6T2 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC24.38■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms