Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC17.1■□□□□ 0.33
ABCA4P78363 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC17.1■□□□□ 0.33
ABCA4P78363 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC17.1■□□□□ 0.33
ABCA4P78363 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC17.1■□□□□ 0.33
ABCA4P78363 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
ABCA4P78363 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC17.1■□□□□ 0.33
ABCA4P78363 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC17.1■□□□□ 0.33
ABCA4P78363 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ABCA4P78363 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC17.09■□□□□ 0.33
ABCA4P78363 DUX4L26-201ENST00000489078 1255 ntBASIC17.09■□□□□ 0.33
ABCA4P78363 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
ABCA4P78363 AL031985.4-201ENST00000642138 673 ntBASIC17.09■□□□□ 0.33
ABCA4P78363 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ABCA4P78363 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
ABCA4P78363 WWC2-AS2-201ENST00000578387 2183 ntBASIC17.09■□□□□ 0.33
ABCA4P78363 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
ABCA4P78363 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
ABCA4P78363 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC17.09■□□□□ 0.33
ABCA4P78363 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
ABCA4P78363 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ABCA4P78363 AC011506.1-201ENST00000474329 610 ntBASIC17.09■□□□□ 0.33
ABCA4P78363 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC17.09■□□□□ 0.33
ABCA4P78363 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ABCA4P78363 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
ABCA4P78363 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
ABCA4P78363 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC17.09■□□□□ 0.33
ABCA4P78363 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
ABCA4P78363 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC17.08■□□□□ 0.33
ABCA4P78363 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC17.08■□□□□ 0.33
ABCA4P78363 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
ABCA4P78363 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC17.08■□□□□ 0.33
ABCA4P78363 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
ABCA4P78363 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC17.08■□□□□ 0.33
ABCA4P78363 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC17.08■□□□□ 0.33
ABCA4P78363 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC17.08■□□□□ 0.33
ABCA4P78363 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC17.08■□□□□ 0.33
ABCA4P78363 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
ABCA4P78363 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
ABCA4P78363 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC17.08■□□□□ 0.32
ABCA4P78363 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
ABCA4P78363 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
ABCA4P78363 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
ABCA4P78363 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
ABCA4P78363 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ABCA4P78363 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ABCA4P78363 TERF1P1-201ENST00000311003 1181 ntBASIC17.08■□□□□ 0.32
ABCA4P78363 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC17.08■□□□□ 0.32
ABCA4P78363 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC17.08■□□□□ 0.32
ABCA4P78363 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC17.08■□□□□ 0.32
ABCA4P78363 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
ABCA4P78363 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
ABCA4P78363 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.07■□□□□ 0.32
ABCA4P78363 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
ABCA4P78363 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
ABCA4P78363 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
ABCA4P78363 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC17.07■□□□□ 0.32
ABCA4P78363 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
ABCA4P78363 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC17.07■□□□□ 0.32
ABCA4P78363 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
ABCA4P78363 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
ABCA4P78363 MIR1238-201ENST00000408483 83 ntBASIC17.07■□□□□ 0.32
ABCA4P78363 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC17.07■□□□□ 0.32
ABCA4P78363 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
ABCA4P78363 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
ABCA4P78363 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
ABCA4P78363 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
ABCA4P78363 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC17.07■□□□□ 0.32
ABCA4P78363 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
ABCA4P78363 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC17.07■□□□□ 0.32
ABCA4P78363 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC17.07■□□□□ 0.32
ABCA4P78363 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC17.07■□□□□ 0.32
ABCA4P78363 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
ABCA4P78363 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC17.07■□□□□ 0.32
ABCA4P78363 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC17.07■□□□□ 0.32
ABCA4P78363 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC17.07■□□□□ 0.32
ABCA4P78363 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC17.07■□□□□ 0.32
ABCA4P78363 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
ABCA4P78363 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC17.06■□□□□ 0.32
ABCA4P78363 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
ABCA4P78363 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC17.06■□□□□ 0.32
ABCA4P78363 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
ABCA4P78363 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC17.06■□□□□ 0.32
ABCA4P78363 WWOX-216ENST00000569818 525 ntBASIC17.06■□□□□ 0.32
ABCA4P78363 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
ABCA4P78363 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC17.06■□□□□ 0.32
ABCA4P78363 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC17.06■□□□□ 0.32
ABCA4P78363 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC17.06■□□□□ 0.32
ABCA4P78363 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
ABCA4P78363 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ABCA4P78363 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ABCA4P78363 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC17.06■□□□□ 0.32
ABCA4P78363 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
ABCA4P78363 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ABCA4P78363 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC17.05■□□□□ 0.32
ABCA4P78363 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ABCA4P78363 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
ABCA4P78363 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
ABCA4P78363 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ABCA4P78363 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
ABCA4P78363 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms