Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF4P78317 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
RNF4P78317 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC18.38■□□□□ 0.53
RNF4P78317 LY6E-205ENST00000519611 635 ntTSL 3 BASIC18.38■□□□□ 0.53
RNF4P78317 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
RNF4P78317 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.38■□□□□ 0.53
RNF4P78317 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF4P78317 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC18.38■□□□□ 0.53
RNF4P78317 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
RNF4P78317 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF4P78317 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC18.38■□□□□ 0.53
RNF4P78317 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF4P78317 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC18.38■□□□□ 0.53
RNF4P78317 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
RNF4P78317 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF4P78317 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF4P78317 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC18.38■□□□□ 0.53
RNF4P78317 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF4P78317 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
RNF4P78317 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC18.37■□□□□ 0.53
RNF4P78317 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF4P78317 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF4P78317 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF4P78317 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
RNF4P78317 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC18.37■□□□□ 0.53
RNF4P78317 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF4P78317 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC18.37■□□□□ 0.53
RNF4P78317 AC239809.2-201ENST00000415381 517 ntBASIC18.37■□□□□ 0.53
RNF4P78317 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.37■□□□□ 0.53
RNF4P78317 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC18.37■□□□□ 0.53
RNF4P78317 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC18.37■□□□□ 0.53
RNF4P78317 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC18.37■□□□□ 0.53
RNF4P78317 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC18.37■□□□□ 0.53
RNF4P78317 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC18.37■□□□□ 0.53
RNF4P78317 FAM197Y4-202ENST00000622692 608 ntBASIC18.37■□□□□ 0.53
RNF4P78317 AL391422.3-201ENST00000603791 2761 ntBASIC18.37■□□□□ 0.53
RNF4P78317 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF4P78317 PHGDH-210ENST00000641115 1638 ntBASIC18.37■□□□□ 0.53
RNF4P78317 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RNF4P78317 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF4P78317 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC18.37■□□□□ 0.53
RNF4P78317 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC18.37■□□□□ 0.53
RNF4P78317 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RNF4P78317 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC18.37■□□□□ 0.53
RNF4P78317 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF4P78317 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF4P78317 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF4P78317 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF4P78317 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF4P78317 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF4P78317 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF4P78317 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
RNF4P78317 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF4P78317 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
RNF4P78317 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.36■□□□□ 0.53
RNF4P78317 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
RNF4P78317 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
RNF4P78317 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF4P78317 SERF2-207ENST00000409614 582 ntTSL 2 BASIC18.36■□□□□ 0.53
RNF4P78317 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
RNF4P78317 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC18.36■□□□□ 0.53
RNF4P78317 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC18.36■□□□□ 0.53
RNF4P78317 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF4P78317 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
RNF4P78317 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF4P78317 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
RNF4P78317 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
RNF4P78317 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC18.36■□□□□ 0.53
RNF4P78317 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC18.36■□□□□ 0.53
RNF4P78317 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF4P78317 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
RNF4P78317 AC116351.2-201ENST00000606540 1585 ntBASIC18.36■□□□□ 0.53
RNF4P78317 AC124016.1-201ENST00000609552 612 ntBASIC18.36■□□□□ 0.53
RNF4P78317 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
RNF4P78317 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
RNF4P78317 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
RNF4P78317 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC18.36■□□□□ 0.53
RNF4P78317 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC18.36■□□□□ 0.53
RNF4P78317 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF4P78317 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
RNF4P78317 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RNF4P78317 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RNF4P78317 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC18.35■□□□□ 0.53
RNF4P78317 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RNF4P78317 PEX7-202ENST00000367756 680 ntTSL 3 BASIC18.35■□□□□ 0.53
RNF4P78317 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF4P78317 KRASP1-201ENST00000407852 552 ntBASIC18.35■□□□□ 0.53
RNF4P78317 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC18.35■□□□□ 0.53
RNF4P78317 AC133681.1-201ENST00000465482 601 ntBASIC18.35■□□□□ 0.53
RNF4P78317 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC18.35■□□□□ 0.53
RNF4P78317 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC18.35■□□□□ 0.53
RNF4P78317 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
RNF4P78317 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF4P78317 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC18.35■□□□□ 0.53
RNF4P78317 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
RNF4P78317 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF4P78317 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF4P78317 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RNF4P78317 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF4P78317 LINC01521-201ENST00000504184 1943 ntBASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms