Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.75■□□□□ 0.91
HDAC4P56524 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HDAC4P56524 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HDAC4P56524 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HDAC4P56524 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HDAC4P56524 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HDAC4P56524 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
HDAC4P56524 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC20.75■□□□□ 0.91
HDAC4P56524 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
HDAC4P56524 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HDAC4P56524 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
HDAC4P56524 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HDAC4P56524 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.74■□□□□ 0.91
HDAC4P56524 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HDAC4P56524 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
HDAC4P56524 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC20.74■□□□□ 0.91
HDAC4P56524 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC20.74■□□□□ 0.91
HDAC4P56524 PNMA6B-201ENST00000538162 1200 ntBASIC20.74■□□□□ 0.91
HDAC4P56524 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HDAC4P56524 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
HDAC4P56524 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
HDAC4P56524 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HDAC4P56524 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.73■□□□□ 0.91
HDAC4P56524 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC20.73■□□□□ 0.91
HDAC4P56524 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
HDAC4P56524 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HDAC4P56524 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.73■□□□□ 0.91
HDAC4P56524 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC20.73■□□□□ 0.91
HDAC4P56524 AC006557.6-201ENST00000623071 864 ntBASIC20.73■□□□□ 0.91
HDAC4P56524 STK25-204ENST00000405585 1643 ntTSL 2 BASIC20.73■□□□□ 0.91
HDAC4P56524 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.73■□□□□ 0.91
HDAC4P56524 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
HDAC4P56524 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC20.73■□□□□ 0.91
HDAC4P56524 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC20.73■□□□□ 0.91
HDAC4P56524 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.73■□□□□ 0.91
HDAC4P56524 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HDAC4P56524 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
HDAC4P56524 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HDAC4P56524 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HDAC4P56524 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC20.72■□□□□ 0.91
HDAC4P56524 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC20.72■□□□□ 0.91
HDAC4P56524 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HDAC4P56524 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HDAC4P56524 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HDAC4P56524 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
HDAC4P56524 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC20.72■□□□□ 0.91
HDAC4P56524 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC20.72■□□□□ 0.91
HDAC4P56524 INO80E-214ENST00000620599 515 ntTSL 2 BASIC20.72■□□□□ 0.91
HDAC4P56524 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
HDAC4P56524 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HDAC4P56524 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
HDAC4P56524 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
HDAC4P56524 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
HDAC4P56524 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.72■□□□□ 0.91
HDAC4P56524 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
HDAC4P56524 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HDAC4P56524 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HDAC4P56524 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HDAC4P56524 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC20.71■□□□□ 0.91
HDAC4P56524 AL390719.1-204ENST00000412397 1219 ntBASIC20.71■□□□□ 0.91
HDAC4P56524 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC20.71■□□□□ 0.91
HDAC4P56524 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC20.71■□□□□ 0.91
HDAC4P56524 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC20.71■□□□□ 0.91
HDAC4P56524 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
HDAC4P56524 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC20.71■□□□□ 0.91
HDAC4P56524 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
HDAC4P56524 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC20.71■□□□□ 0.91
HDAC4P56524 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HDAC4P56524 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
HDAC4P56524 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
HDAC4P56524 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HDAC4P56524 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
HDAC4P56524 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.7■□□□□ 0.91
HDAC4P56524 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.91
HDAC4P56524 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
HDAC4P56524 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC20.7■□□□□ 0.9
HDAC4P56524 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HDAC4P56524 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
HDAC4P56524 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
HDAC4P56524 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HDAC4P56524 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC20.7■□□□□ 0.9
HDAC4P56524 RER1-204ENST00000378518 522 ntTSL 3 BASIC20.7■□□□□ 0.9
HDAC4P56524 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
HDAC4P56524 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC20.7■□□□□ 0.9
HDAC4P56524 REXO2-208ENST00000539754 791 ntTSL 2 BASIC20.7■□□□□ 0.9
HDAC4P56524 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HDAC4P56524 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC20.7■□□□□ 0.9
HDAC4P56524 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HDAC4P56524 AC125437.2-201ENST00000625180 2167 ntBASIC20.7■□□□□ 0.9
HDAC4P56524 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HDAC4P56524 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HDAC4P56524 GOLGA2P11-201ENST00000562660 1621 ntBASIC20.7■□□□□ 0.9
HDAC4P56524 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
HDAC4P56524 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HDAC4P56524 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC20.7■□□□□ 0.9
HDAC4P56524 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
HDAC4P56524 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
HDAC4P56524 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.69■□□□□ 0.9
HDAC4P56524 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HDAC4P56524 TMEM179-206ENST00000616017 1645 ntBASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms