Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 GOLGA2P11-201ENST00000562660 1621 ntBASIC20.32■□□□□ 0.84
CDH4P55283 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDH4P55283 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.32■□□□□ 0.84
CDH4P55283 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC20.32■□□□□ 0.84
CDH4P55283 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDH4P55283 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDH4P55283 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
CDH4P55283 UBE2SP1-201ENST00000450587 669 ntBASIC20.32■□□□□ 0.84
CDH4P55283 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC20.32■□□□□ 0.84
CDH4P55283 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CDH4P55283 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC20.32■□□□□ 0.84
CDH4P55283 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC20.32■□□□□ 0.84
CDH4P55283 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDH4P55283 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDH4P55283 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
CDH4P55283 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDH4P55283 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDH4P55283 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDH4P55283 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CDH4P55283 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDH4P55283 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
CDH4P55283 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDH4P55283 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDH4P55283 AL391422.3-201ENST00000603791 2761 ntBASIC20.31■□□□□ 0.84
CDH4P55283 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC20.31■□□□□ 0.84
CDH4P55283 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDH4P55283 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CDH4P55283 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.31■□□□□ 0.84
CDH4P55283 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.31■□□□□ 0.84
CDH4P55283 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDH4P55283 PEX7-202ENST00000367756 680 ntTSL 3 BASIC20.31■□□□□ 0.84
CDH4P55283 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDH4P55283 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CDH4P55283 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
CDH4P55283 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CDH4P55283 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC20.31■□□□□ 0.84
CDH4P55283 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC20.31■□□□□ 0.84
CDH4P55283 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC20.31■□□□□ 0.84
CDH4P55283 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC20.31■□□□□ 0.84
CDH4P55283 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC20.31■□□□□ 0.84
CDH4P55283 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CDH4P55283 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
CDH4P55283 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDH4P55283 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
CDH4P55283 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.31■□□□□ 0.84
CDH4P55283 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CDH4P55283 NBPF21P-201ENST00000425093 1451 ntBASIC20.3■□□□□ 0.84
CDH4P55283 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDH4P55283 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC20.3■□□□□ 0.84
CDH4P55283 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC20.3■□□□□ 0.84
CDH4P55283 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDH4P55283 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.3■□□□□ 0.84
CDH4P55283 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
CDH4P55283 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDH4P55283 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC20.3■□□□□ 0.84
CDH4P55283 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
CDH4P55283 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC20.3■□□□□ 0.84
CDH4P55283 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CDH4P55283 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CDH4P55283 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDH4P55283 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDH4P55283 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDH4P55283 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CDH4P55283 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.3■□□□□ 0.84
CDH4P55283 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CDH4P55283 AP001271.2-201ENST00000624018 1556 ntBASIC20.29■□□□□ 0.84
CDH4P55283 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CDH4P55283 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC20.29■□□□□ 0.84
CDH4P55283 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDH4P55283 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.29■□□□□ 0.84
CDH4P55283 AL691432.2-201ENST00000607222 2038 ntBASIC20.29■□□□□ 0.84
CDH4P55283 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
CDH4P55283 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDH4P55283 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CDH4P55283 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CDH4P55283 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CDH4P55283 BAALC-201ENST00000297574 801 ntTSL 3 BASIC20.29■□□□□ 0.84
CDH4P55283 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDH4P55283 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
CDH4P55283 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CDH4P55283 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.29■□□□□ 0.84
CDH4P55283 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC20.29■□□□□ 0.84
CDH4P55283 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CDH4P55283 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC20.29■□□□□ 0.84
CDH4P55283 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDH4P55283 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC20.29■□□□□ 0.84
CDH4P55283 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC20.29■□□□□ 0.84
CDH4P55283 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC20.29■□□□□ 0.84
CDH4P55283 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC20.29■□□□□ 0.84
CDH4P55283 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC20.29■□□□□ 0.84
CDH4P55283 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDH4P55283 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
CDH4P55283 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC20.29■□□□□ 0.84
CDH4P55283 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.29■□□□□ 0.84
CDH4P55283 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CDH4P55283 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.29■□□□□ 0.84
CDH4P55283 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDH4P55283 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CDH4P55283 AP006587.1-201ENST00000534129 1502 ntBASIC20.28■□□□□ 0.84
CDH4P55283 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms