Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 GXYLT1P5-201ENST00000614548 1189 ntBASIC15.1■□□□□ 0.01
HLA-DMBP28068 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC15.1■□□□□ 0.01
HLA-DMBP28068 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC15.1■□□□□ 0.01
HLA-DMBP28068 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC15.1■□□□□ 0.01
HLA-DMBP28068 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC15.1■□□□□ 0.01
HLA-DMBP28068 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC15.1■□□□□ 0.01
HLA-DMBP28068 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HLA-DMBP28068 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HLA-DMBP28068 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HLA-DMBP28068 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HLA-DMBP28068 CD37-204ENST00000535669 1674 ntTSL 2 BASIC15.09■□□□□ 0.01
HLA-DMBP28068 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HLA-DMBP28068 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
HLA-DMBP28068 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
HLA-DMBP28068 STX6-204ENST00000542060 4809 ntTSL 2 BASIC15.09■□□□□ 0.01
HLA-DMBP28068 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
HLA-DMBP28068 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HLA-DMBP28068 POLI-202ENST00000406285 2030 ntTSL 2 BASIC15.09■□□□□ 0.01
HLA-DMBP28068 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC15.09■□□□□ 0.01
HLA-DMBP28068 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
HLA-DMBP28068 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
HLA-DMBP28068 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
HLA-DMBP28068 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC15.09■□□□□ 0.01
HLA-DMBP28068 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HLA-DMBP28068 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
HLA-DMBP28068 CNN2P6-201ENST00000439038 900 ntBASIC15.09■□□□□ 0.01
HLA-DMBP28068 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC15.09■□□□□ 0.01
HLA-DMBP28068 AC007322.4-201ENST00000509611 723 ntBASIC15.09■□□□□ 0.01
HLA-DMBP28068 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC15.09■□□□□ 0.01
HLA-DMBP28068 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC15.09■□□□□ 0.01
HLA-DMBP28068 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
HLA-DMBP28068 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HLA-DMBP28068 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
HLA-DMBP28068 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC15.09■□□□□ 0.01
HLA-DMBP28068 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HLA-DMBP28068 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HLA-DMBP28068 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HLA-DMBP28068 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC15.08■□□□□ 0.01
HLA-DMBP28068 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
HLA-DMBP28068 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC15.08■□□□□ 0.01
HLA-DMBP28068 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC15.08■□□□□ 0.01
HLA-DMBP28068 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
HLA-DMBP28068 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
HLA-DMBP28068 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HLA-DMBP28068 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC15.08■□□□□ 0
HLA-DMBP28068 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC15.08■□□□□ 0
HLA-DMBP28068 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC15.08■□□□□ 0
HLA-DMBP28068 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
HLA-DMBP28068 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HLA-DMBP28068 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
HLA-DMBP28068 PTBP1P-201ENST00000554374 1601 ntBASIC15.08■□□□□ 0
HLA-DMBP28068 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC15.08■□□□□ 0
HLA-DMBP28068 HLA-L-209ENST00000420110 1011 ntBASIC15.08■□□□□ 0
HLA-DMBP28068 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC15.08■□□□□ 0
HLA-DMBP28068 PPP1R14BP3-201ENST00000509033 445 ntBASIC15.08■□□□□ 0
HLA-DMBP28068 DUX4L16-201ENST00000555130 1264 ntBASIC15.08■□□□□ 0
HLA-DMBP28068 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC15.08■□□□□ 0
HLA-DMBP28068 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC15.08■□□□□ 0
HLA-DMBP28068 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC15.08■□□□□ 0
HLA-DMBP28068 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
HLA-DMBP28068 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC15.08■□□□□ 0
HLA-DMBP28068 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HLA-DMBP28068 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC15.08■□□□□ 0
HLA-DMBP28068 TREX1-205ENST00000625293 1783 ntBASIC15.08■□□□□ 0
HLA-DMBP28068 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HLA-DMBP28068 AC068338.2-201ENST00000563278 1430 ntBASIC15.08■□□□□ 0
HLA-DMBP28068 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
HLA-DMBP28068 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
HLA-DMBP28068 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
HLA-DMBP28068 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC15.08■□□□□ 0
HLA-DMBP28068 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
HLA-DMBP28068 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC15.07■□□□□ 0
HLA-DMBP28068 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HLA-DMBP28068 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC15.07■□□□□ 0
HLA-DMBP28068 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HLA-DMBP28068 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
HLA-DMBP28068 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HLA-DMBP28068 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HLA-DMBP28068 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
HLA-DMBP28068 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC15.07■□□□□ 0
HLA-DMBP28068 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HLA-DMBP28068 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
HLA-DMBP28068 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
HLA-DMBP28068 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HLA-DMBP28068 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HLA-DMBP28068 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
HLA-DMBP28068 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
HLA-DMBP28068 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
HLA-DMBP28068 MIR663A-201ENST00000385250 93 ntBASIC15.07■□□□□ 0
HLA-DMBP28068 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC15.07■□□□□ 0
HLA-DMBP28068 AL355472.2-201ENST00000422958 438 ntBASIC15.07■□□□□ 0
HLA-DMBP28068 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC15.07■□□□□ 0
HLA-DMBP28068 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HLA-DMBP28068 RARRES2P4-201ENST00000514074 484 ntBASIC15.07■□□□□ 0
HLA-DMBP28068 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC15.07■□□□□ 0
HLA-DMBP28068 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
HLA-DMBP28068 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HLA-DMBP28068 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HLA-DMBP28068 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
HLA-DMBP28068 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC15.07■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms