Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL9A1P20849 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
COL9A1P20849 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL9A1P20849 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC20.51■□□□□ 0.87
COL9A1P20849 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC20.51■□□□□ 0.87
COL9A1P20849 AC004951.3-201ENST00000418645 1148 ntBASIC20.51■□□□□ 0.87
COL9A1P20849 ATP5G2P1-201ENST00000433580 426 ntBASIC20.51■□□□□ 0.87
COL9A1P20849 COX11P1-201ENST00000489116 835 ntBASIC20.51■□□□□ 0.87
COL9A1P20849 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC20.51■□□□□ 0.87
COL9A1P20849 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL9A1P20849 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL9A1P20849 MIR3652-201ENST00000579335 131 ntBASIC20.51■□□□□ 0.87
COL9A1P20849 AL671883.3-201ENST00000603274 991 ntBASIC20.51■□□□□ 0.87
COL9A1P20849 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL9A1P20849 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.51■□□□□ 0.87
COL9A1P20849 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL9A1P20849 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL9A1P20849 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL9A1P20849 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL9A1P20849 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL9A1P20849 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC20.51■□□□□ 0.87
COL9A1P20849 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL9A1P20849 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL9A1P20849 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.5■□□□□ 0.87
COL9A1P20849 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
COL9A1P20849 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
COL9A1P20849 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.5■□□□□ 0.87
COL9A1P20849 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.5■□□□□ 0.87
COL9A1P20849 PTK2-216ENST00000519881 863 ntTSL 3 BASIC20.5■□□□□ 0.87
COL9A1P20849 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC20.5■□□□□ 0.87
COL9A1P20849 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC20.5■□□□□ 0.87
COL9A1P20849 AL138966.2-201ENST00000621997 464 ntBASIC20.5■□□□□ 0.87
COL9A1P20849 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL9A1P20849 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL9A1P20849 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL9A1P20849 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL9A1P20849 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.49■□□□□ 0.87
COL9A1P20849 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.49■□□□□ 0.87
COL9A1P20849 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL9A1P20849 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL9A1P20849 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL9A1P20849 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC20.49■□□□□ 0.87
COL9A1P20849 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL9A1P20849 MIR1233-2-201ENST00000408138 82 ntBASIC20.49■□□□□ 0.87
COL9A1P20849 MIR1233-1-201ENST00000408722 82 ntBASIC20.49■□□□□ 0.87
COL9A1P20849 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC20.49■□□□□ 0.87
COL9A1P20849 UNC93B7-201ENST00000509439 705 ntBASIC20.49■□□□□ 0.87
COL9A1P20849 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC20.49■□□□□ 0.87
COL9A1P20849 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC20.49■□□□□ 0.87
COL9A1P20849 AC130371.2-201ENST00000619443 611 ntBASIC20.49■□□□□ 0.87
COL9A1P20849 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.49■□□□□ 0.87
COL9A1P20849 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL9A1P20849 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.49■□□□□ 0.87
COL9A1P20849 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
COL9A1P20849 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL9A1P20849 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC20.49■□□□□ 0.87
COL9A1P20849 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL9A1P20849 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.49■□□□□ 0.87
COL9A1P20849 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL9A1P20849 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
COL9A1P20849 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.48■□□□□ 0.87
COL9A1P20849 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
COL9A1P20849 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL9A1P20849 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC20.48■□□□□ 0.87
COL9A1P20849 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
COL9A1P20849 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL9A1P20849 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
COL9A1P20849 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL9A1P20849 INGX-201ENST00000359239 846 ntBASIC20.48■□□□□ 0.87
COL9A1P20849 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC20.48■□□□□ 0.87
COL9A1P20849 HMGA1P5-201ENST00000412453 271 ntBASIC20.48■□□□□ 0.87
COL9A1P20849 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC20.48■□□□□ 0.87
COL9A1P20849 DAP-202ENST00000432074 1048 ntTSL 2 BASIC20.48■□□□□ 0.87
COL9A1P20849 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC20.48■□□□□ 0.87
COL9A1P20849 SKP2-204ENST00000508514 821 ntTSL 3 BASIC20.48■□□□□ 0.87
COL9A1P20849 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC20.48■□□□□ 0.87
COL9A1P20849 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL9A1P20849 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL9A1P20849 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL9A1P20849 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
COL9A1P20849 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.48■□□□□ 0.87
COL9A1P20849 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL9A1P20849 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.48■□□□□ 0.87
COL9A1P20849 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL9A1P20849 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.48■□□□□ 0.87
COL9A1P20849 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL9A1P20849 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC20.47■□□□□ 0.87
COL9A1P20849 AC011484.1-201ENST00000377652 1995 ntBASIC20.47■□□□□ 0.87
COL9A1P20849 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
COL9A1P20849 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL9A1P20849 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC20.47■□□□□ 0.87
COL9A1P20849 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC20.47■□□□□ 0.87
COL9A1P20849 AC079776.4-201ENST00000511039 504 ntBASIC20.47■□□□□ 0.87
COL9A1P20849 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC20.47■□□□□ 0.87
COL9A1P20849 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL9A1P20849 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL9A1P20849 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20.47■□□□□ 0.87
COL9A1P20849 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL9A1P20849 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL9A1P20849 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms