Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
MSH3P20585 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSH3P20585 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSH3P20585 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.74■□□□□ 0.75
MSH3P20585 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
MSH3P20585 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSH3P20585 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC19.74■□□□□ 0.75
MSH3P20585 ABHD17AP6-201ENST00000458502 1044 ntBASIC19.74■□□□□ 0.75
MSH3P20585 UNC93B4-201ENST00000505679 747 ntBASIC19.74■□□□□ 0.75
MSH3P20585 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC19.74■□□□□ 0.75
MSH3P20585 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
MSH3P20585 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC19.74■□□□□ 0.75
MSH3P20585 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
MSH3P20585 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
MSH3P20585 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
MSH3P20585 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC19.74■□□□□ 0.75
MSH3P20585 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.74■□□□□ 0.75
MSH3P20585 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
MSH3P20585 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC19.74■□□□□ 0.75
MSH3P20585 BX119927.1-201ENST00000636596 1552 ntBASIC19.74■□□□□ 0.75
MSH3P20585 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
MSH3P20585 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
MSH3P20585 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSH3P20585 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
MSH3P20585 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH3P20585 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
MSH3P20585 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH3P20585 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH3P20585 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH3P20585 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH3P20585 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH3P20585 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC19.73■□□□□ 0.75
MSH3P20585 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
MSH3P20585 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH3P20585 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.73■□□□□ 0.75
MSH3P20585 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
MSH3P20585 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.73■□□□□ 0.75
MSH3P20585 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH3P20585 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
MSH3P20585 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
MSH3P20585 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
MSH3P20585 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC19.73■□□□□ 0.75
MSH3P20585 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
MSH3P20585 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC19.73■□□□□ 0.75
MSH3P20585 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
MSH3P20585 HES2-206ENST00000489730 730 ntTSL 2 BASIC19.73■□□□□ 0.75
MSH3P20585 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC19.73■□□□□ 0.75
MSH3P20585 AP003097.1-201ENST00000530657 1135 ntBASIC19.73■□□□□ 0.75
MSH3P20585 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC19.73■□□□□ 0.75
MSH3P20585 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
MSH3P20585 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
MSH3P20585 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.73■□□□□ 0.75
MSH3P20585 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.73■□□□□ 0.75
MSH3P20585 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.73■□□□□ 0.75
MSH3P20585 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
MSH3P20585 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
MSH3P20585 AL391422.3-201ENST00000603791 2761 ntBASIC19.72■□□□□ 0.75
MSH3P20585 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.72■□□□□ 0.75
MSH3P20585 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
MSH3P20585 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSH3P20585 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
MSH3P20585 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSH3P20585 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.72■□□□□ 0.75
MSH3P20585 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSH3P20585 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
MSH3P20585 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSH3P20585 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
MSH3P20585 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
MSH3P20585 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC19.72■□□□□ 0.75
MSH3P20585 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
MSH3P20585 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.72■□□□□ 0.75
MSH3P20585 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC19.72■□□□□ 0.75
MSH3P20585 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
MSH3P20585 RNF165-205ENST00000588679 2904 ntBASIC19.72■□□□□ 0.75
MSH3P20585 AC008687.6-201ENST00000596318 630 ntBASIC19.72■□□□□ 0.75
MSH3P20585 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSH3P20585 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19.72■□□□□ 0.75
MSH3P20585 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSH3P20585 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
MSH3P20585 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.72■□□□□ 0.75
MSH3P20585 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
MSH3P20585 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
MSH3P20585 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
MSH3P20585 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
MSH3P20585 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MSH3P20585 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
MSH3P20585 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MSH3P20585 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC19.71■□□□□ 0.75
MSH3P20585 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
MSH3P20585 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MSH3P20585 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
MSH3P20585 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
MSH3P20585 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
MSH3P20585 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
MSH3P20585 AC026366.1-201ENST00000488803 879 ntBASIC19.71■□□□□ 0.75
MSH3P20585 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC19.71■□□□□ 0.75
MSH3P20585 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
MSH3P20585 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
MSH3P20585 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.71■□□□□ 0.75
MSH3P20585 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms