Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC22.7■■□□□ 1.22
COL11A1P12107 AC005521.1-201ENST00000393351 872 ntBASIC22.69■■□□□ 1.22
COL11A1P12107 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
COL11A1P12107 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC22.69■■□□□ 1.22
COL11A1P12107 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
COL11A1P12107 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC22.69■■□□□ 1.22
COL11A1P12107 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC22.69■■□□□ 1.22
COL11A1P12107 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC22.69■■□□□ 1.22
COL11A1P12107 ME2-216ENST00000639850 2331 ntTSL 5 BASIC22.69■■□□□ 1.22
COL11A1P12107 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
COL11A1P12107 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC22.68■■□□□ 1.22
COL11A1P12107 SMG8-203ENST00000578922 2178 ntBASIC22.68■■□□□ 1.22
COL11A1P12107 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
COL11A1P12107 STK25-204ENST00000405585 1643 ntTSL 2 BASIC22.68■■□□□ 1.22
COL11A1P12107 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC22.68■■□□□ 1.22
COL11A1P12107 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
COL11A1P12107 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
COL11A1P12107 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC22.68■■□□□ 1.22
COL11A1P12107 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC22.68■■□□□ 1.22
COL11A1P12107 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
COL11A1P12107 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
COL11A1P12107 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
COL11A1P12107 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
COL11A1P12107 B3GAT3P1-201ENST00000471720 806 ntBASIC22.67■■□□□ 1.22
COL11A1P12107 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC22.67■■□□□ 1.22
COL11A1P12107 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
COL11A1P12107 KRT18P16-201ENST00000510337 1294 ntBASIC22.67■■□□□ 1.22
COL11A1P12107 KRT18P35-201ENST00000510488 1269 ntBASIC22.67■■□□□ 1.22
COL11A1P12107 DGCR10-201ENST00000609839 495 ntBASIC22.67■■□□□ 1.22
COL11A1P12107 MOK-225ENST00000522867 1883 ntTSL 5 BASIC22.67■■□□□ 1.22
COL11A1P12107 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
COL11A1P12107 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
COL11A1P12107 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC22.67■■□□□ 1.22
COL11A1P12107 LINC01568-207ENST00000641790 1380 ntBASIC22.67■■□□□ 1.22
COL11A1P12107 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC22.67■■□□□ 1.22
COL11A1P12107 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
COL11A1P12107 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC22.67■■□□□ 1.22
COL11A1P12107 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
COL11A1P12107 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC22.67■■□□□ 1.22
COL11A1P12107 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL11A1P12107 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL11A1P12107 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC22.66■■□□□ 1.22
COL11A1P12107 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC22.66■■□□□ 1.22
COL11A1P12107 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
COL11A1P12107 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL11A1P12107 AC011506.1-201ENST00000474329 610 ntBASIC22.66■■□□□ 1.22
COL11A1P12107 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL11A1P12107 AL445675.2-201ENST00000620291 557 ntBASIC22.66■■□□□ 1.22
COL11A1P12107 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC22.66■■□□□ 1.22
COL11A1P12107 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
COL11A1P12107 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC22.66■■□□□ 1.22
COL11A1P12107 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC22.66■■□□□ 1.22
COL11A1P12107 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
COL11A1P12107 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL11A1P12107 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC22.66■■□□□ 1.22
COL11A1P12107 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL11A1P12107 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL11A1P12107 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL11A1P12107 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL11A1P12107 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL11A1P12107 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
COL11A1P12107 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC22.66■■□□□ 1.22
COL11A1P12107 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC22.66■■□□□ 1.22
COL11A1P12107 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC22.66■■□□□ 1.22
COL11A1P12107 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC22.66■■□□□ 1.22
COL11A1P12107 FITM1-202ENST00000559294 800 ntBASIC22.66■■□□□ 1.22
COL11A1P12107 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC22.66■■□□□ 1.22
COL11A1P12107 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC22.66■■□□□ 1.22
COL11A1P12107 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
COL11A1P12107 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC22.66■■□□□ 1.22
COL11A1P12107 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC22.65■■□□□ 1.22
COL11A1P12107 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC22.65■■□□□ 1.22
COL11A1P12107 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC22.65■■□□□ 1.22
COL11A1P12107 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
COL11A1P12107 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL11A1P12107 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL11A1P12107 TERF1P1-201ENST00000311003 1181 ntBASIC22.65■■□□□ 1.22
COL11A1P12107 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL11A1P12107 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC22.65■■□□□ 1.22
COL11A1P12107 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC22.65■■□□□ 1.22
COL11A1P12107 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC22.65■■□□□ 1.22
COL11A1P12107 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL11A1P12107 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL11A1P12107 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL11A1P12107 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
COL11A1P12107 PRR31-201ENST00000371629 978 ntTSL 2 BASIC22.64■■□□□ 1.22
COL11A1P12107 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC22.64■■□□□ 1.22
COL11A1P12107 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC22.64■■□□□ 1.22
COL11A1P12107 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC22.64■■□□□ 1.22
COL11A1P12107 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.22
COL11A1P12107 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC22.64■■□□□ 1.21
COL11A1P12107 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.21
COL11A1P12107 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC22.64■■□□□ 1.21
COL11A1P12107 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
COL11A1P12107 TUBB8P6-201ENST00000436895 1288 ntBASIC22.64■■□□□ 1.21
COL11A1P12107 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC22.64■■□□□ 1.21
COL11A1P12107 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.21
COL11A1P12107 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
COL11A1P12107 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC22.63■■□□□ 1.21
COL11A1P12107 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC22.63■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms