Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TPM1P09493 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC21.82■■□□□ 1.08
TPM1P09493 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC21.82■■□□□ 1.08
TPM1P09493 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TPM1P09493 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TPM1P09493 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC21.82■■□□□ 1.08
TPM1P09493 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
TPM1P09493 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
TPM1P09493 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC21.82■■□□□ 1.08
TPM1P09493 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC21.82■■□□□ 1.08
TPM1P09493 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
TPM1P09493 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TPM1P09493 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC21.82■■□□□ 1.08
TPM1P09493 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC21.81■■□□□ 1.08
TPM1P09493 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
TPM1P09493 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC21.81■■□□□ 1.08
TPM1P09493 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
TPM1P09493 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC21.81■■□□□ 1.08
TPM1P09493 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC21.81■■□□□ 1.08
TPM1P09493 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
TPM1P09493 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC21.81■■□□□ 1.08
TPM1P09493 HYI-206ENST00000372434 1025 ntTSL 5 BASIC21.81■■□□□ 1.08
TPM1P09493 STOX2-205ENST00000513034 807 ntTSL 3 BASIC21.81■■□□□ 1.08
TPM1P09493 TERF1P2-201ENST00000583350 1212 ntBASIC21.81■■□□□ 1.08
TPM1P09493 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
TPM1P09493 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
TPM1P09493 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
TPM1P09493 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
TPM1P09493 TREX1-205ENST00000625293 1783 ntBASIC21.81■■□□□ 1.08
TPM1P09493 MOK-225ENST00000522867 1883 ntTSL 5 BASIC21.81■■□□□ 1.08
TPM1P09493 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
TPM1P09493 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
TPM1P09493 AC093484.2-201ENST00000580996 2166 ntBASIC21.81■■□□□ 1.08
TPM1P09493 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
TPM1P09493 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC21.81■■□□□ 1.08
TPM1P09493 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
TPM1P09493 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
TPM1P09493 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC21.8■■□□□ 1.08
TPM1P09493 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
TPM1P09493 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC21.8■■□□□ 1.08
TPM1P09493 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
TPM1P09493 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC21.8■■□□□ 1.08
TPM1P09493 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
TPM1P09493 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
TPM1P09493 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
TPM1P09493 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
TPM1P09493 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
TPM1P09493 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
TPM1P09493 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
TPM1P09493 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC21.8■■□□□ 1.08
TPM1P09493 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC21.8■■□□□ 1.08
TPM1P09493 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC21.8■■□□□ 1.08
TPM1P09493 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC21.8■■□□□ 1.08
TPM1P09493 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
TPM1P09493 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
TPM1P09493 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC21.8■■□□□ 1.08
TPM1P09493 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
TPM1P09493 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC21.8■■□□□ 1.08
TPM1P09493 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC21.8■■□□□ 1.08
TPM1P09493 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
TPM1P09493 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
TPM1P09493 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
TPM1P09493 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
TPM1P09493 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC21.79■■□□□ 1.08
TPM1P09493 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
TPM1P09493 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
TPM1P09493 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
TPM1P09493 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
TPM1P09493 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
TPM1P09493 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
TPM1P09493 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
TPM1P09493 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
TPM1P09493 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC21.79■■□□□ 1.08
TPM1P09493 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC21.79■■□□□ 1.08
TPM1P09493 AK1-201ENST00000223836 736 ntTSL 3 BASIC21.79■■□□□ 1.08
TPM1P09493 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
TPM1P09493 COX20-201ENST00000366528 568 ntTSL 2 BASIC21.79■■□□□ 1.08
TPM1P09493 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC21.79■■□□□ 1.08
TPM1P09493 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC21.79■■□□□ 1.08
TPM1P09493 AL139246.5-201ENST00000606645 996 ntBASIC21.79■■□□□ 1.08
TPM1P09493 AL356652.1-201ENST00000615962 565 ntBASIC21.79■■□□□ 1.08
TPM1P09493 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
TPM1P09493 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
TPM1P09493 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC21.79■■□□□ 1.08
TPM1P09493 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC21.79■■□□□ 1.08
TPM1P09493 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC21.79■■□□□ 1.08
TPM1P09493 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
TPM1P09493 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
TPM1P09493 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
TPM1P09493 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
TPM1P09493 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TPM1P09493 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC21.78■■□□□ 1.08
TPM1P09493 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
TPM1P09493 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
TPM1P09493 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
TPM1P09493 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
TPM1P09493 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
TPM1P09493 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
TPM1P09493 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
TPM1P09493 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms