Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXC4P09017 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
HOXC4P09017 AP001271.2-201ENST00000624018 1556 ntBASIC19.43■□□□□ 0.7
HOXC4P09017 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.43■□□□□ 0.7
HOXC4P09017 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXC4P09017 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HOXC4P09017 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HOXC4P09017 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXC4P09017 AC073314.1-201ENST00000568729 2216 ntBASIC19.43■□□□□ 0.7
HOXC4P09017 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HOXC4P09017 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
HOXC4P09017 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
HOXC4P09017 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXC4P09017 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
HOXC4P09017 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC19.42■□□□□ 0.7
HOXC4P09017 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXC4P09017 TUBB8P6-201ENST00000436895 1288 ntBASIC19.42■□□□□ 0.7
HOXC4P09017 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HOXC4P09017 ARL16-209ENST00000573715 763 ntTSL 3 BASIC19.42■□□□□ 0.7
HOXC4P09017 ARL16-211ENST00000576135 694 ntTSL 3 BASIC19.42■□□□□ 0.7
HOXC4P09017 AC026471.5-201ENST00000615068 467 ntBASIC19.42■□□□□ 0.7
HOXC4P09017 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
HOXC4P09017 GOLGA6L3-201ENST00000507199 1679 ntBASIC19.42■□□□□ 0.7
HOXC4P09017 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXC4P09017 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.42■□□□□ 0.7
HOXC4P09017 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXC4P09017 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXC4P09017 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HOXC4P09017 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC4P09017 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
HOXC4P09017 AL137060.1-201ENST00000618151 2648 ntBASIC19.41■□□□□ 0.7
HOXC4P09017 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC4P09017 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.41■□□□□ 0.7
HOXC4P09017 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC4P09017 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC4P09017 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC4P09017 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.41■□□□□ 0.7
HOXC4P09017 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC19.41■□□□□ 0.7
HOXC4P09017 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC4P09017 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC19.41■□□□□ 0.7
HOXC4P09017 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC4P09017 FAM197Y1-201ENST00000421178 764 ntBASIC19.41■□□□□ 0.7
HOXC4P09017 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC19.41■□□□□ 0.7
HOXC4P09017 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC19.41■□□□□ 0.7
HOXC4P09017 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC19.41■□□□□ 0.7
HOXC4P09017 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC4P09017 AC073912.3-201ENST00000624414 853 ntBASIC19.41■□□□□ 0.7
HOXC4P09017 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC4P09017 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
HOXC4P09017 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC19.41■□□□□ 0.7
HOXC4P09017 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.41■□□□□ 0.7
HOXC4P09017 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.41■□□□□ 0.7
HOXC4P09017 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC4P09017 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC4P09017 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19.41■□□□□ 0.7
HOXC4P09017 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HOXC4P09017 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
HOXC4P09017 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXC4P09017 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
HOXC4P09017 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.4■□□□□ 0.7
HOXC4P09017 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC19.4■□□□□ 0.7
HOXC4P09017 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC19.4■□□□□ 0.7
HOXC4P09017 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.4■□□□□ 0.7
HOXC4P09017 AL355355.2-201ENST00000442321 338 ntBASIC19.4■□□□□ 0.7
HOXC4P09017 GXYLT1P3-201ENST00000453058 1193 ntBASIC19.4■□□□□ 0.7
HOXC4P09017 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HOXC4P09017 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC19.4■□□□□ 0.7
HOXC4P09017 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC19.4■□□□□ 0.7
HOXC4P09017 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
HOXC4P09017 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC19.4■□□□□ 0.7
HOXC4P09017 FEM1AP1-201ENST00000431297 1995 ntBASIC19.4■□□□□ 0.7
HOXC4P09017 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HOXC4P09017 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HOXC4P09017 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HOXC4P09017 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HOXC4P09017 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.4■□□□□ 0.7
HOXC4P09017 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.39■□□□□ 0.7
HOXC4P09017 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
HOXC4P09017 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXC4P09017 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXC4P09017 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXC4P09017 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.39■□□□□ 0.69
HOXC4P09017 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXC4P09017 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXC4P09017 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC19.39■□□□□ 0.69
HOXC4P09017 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXC4P09017 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
HOXC4P09017 BX088651.1-201ENST00000540551 451 ntBASIC19.39■□□□□ 0.69
HOXC4P09017 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC19.39■□□□□ 0.69
HOXC4P09017 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC19.39■□□□□ 0.69
HOXC4P09017 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
HOXC4P09017 AL445675.2-201ENST00000620291 557 ntBASIC19.39■□□□□ 0.69
HOXC4P09017 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXC4P09017 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC19.39■□□□□ 0.69
HOXC4P09017 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HOXC4P09017 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.39■□□□□ 0.69
HOXC4P09017 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
HOXC4P09017 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
HOXC4P09017 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HOXC4P09017 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms