Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VIMP08670 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.9■□□□□ 0.78
VIMP08670 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
VIMP08670 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
VIMP08670 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
VIMP08670 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VIMP08670 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
VIMP08670 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VIMP08670 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VIMP08670 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VIMP08670 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.9■□□□□ 0.78
VIMP08670 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC19.9■□□□□ 0.78
VIMP08670 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
VIMP08670 RARRES2P11-201ENST00000635158 484 ntBASIC19.9■□□□□ 0.78
VIMP08670 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
VIMP08670 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VIMP08670 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VIMP08670 PODN-203ENST00000395871 2744 ntTSL 5 BASIC19.9■□□□□ 0.78
VIMP08670 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
VIMP08670 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.9■□□□□ 0.78
VIMP08670 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VIMP08670 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.9■□□□□ 0.78
VIMP08670 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.9■□□□□ 0.78
VIMP08670 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
VIMP08670 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VIMP08670 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC19.9■□□□□ 0.78
VIMP08670 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VIMP08670 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VIMP08670 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
VIMP08670 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
VIMP08670 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
VIMP08670 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC19.9■□□□□ 0.78
VIMP08670 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC19.89■□□□□ 0.78
VIMP08670 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC19.89■□□□□ 0.78
VIMP08670 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
VIMP08670 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
VIMP08670 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VIMP08670 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC19.89■□□□□ 0.77
VIMP08670 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VIMP08670 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC19.89■□□□□ 0.77
VIMP08670 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VIMP08670 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VIMP08670 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC19.89■□□□□ 0.77
VIMP08670 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
VIMP08670 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VIMP08670 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
VIMP08670 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VIMP08670 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VIMP08670 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VIMP08670 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VIMP08670 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VIMP08670 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
VIMP08670 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
VIMP08670 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VIMP08670 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VIMP08670 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VIMP08670 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC19.88■□□□□ 0.77
VIMP08670 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC19.88■□□□□ 0.77
VIMP08670 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.88■□□□□ 0.77
VIMP08670 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VIMP08670 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VIMP08670 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VIMP08670 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.88■□□□□ 0.77
VIMP08670 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC19.88■□□□□ 0.77
VIMP08670 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VIMP08670 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC19.88■□□□□ 0.77
VIMP08670 QDPR-206ENST00000508623 601 ntTSL 3 BASIC19.88■□□□□ 0.77
VIMP08670 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC19.88■□□□□ 0.77
VIMP08670 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC19.88■□□□□ 0.77
VIMP08670 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VIMP08670 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VIMP08670 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VIMP08670 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VIMP08670 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VIMP08670 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC19.88■□□□□ 0.77
VIMP08670 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC19.88■□□□□ 0.77
VIMP08670 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VIMP08670 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VIMP08670 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.88■□□□□ 0.77
VIMP08670 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
VIMP08670 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.88■□□□□ 0.77
VIMP08670 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC19.88■□□□□ 0.77
VIMP08670 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC19.87■□□□□ 0.77
VIMP08670 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
VIMP08670 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
VIMP08670 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
VIMP08670 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
VIMP08670 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
VIMP08670 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
VIMP08670 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC19.87■□□□□ 0.77
VIMP08670 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC19.87■□□□□ 0.77
VIMP08670 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
VIMP08670 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC19.87■□□□□ 0.77
VIMP08670 AC018470.1-201ENST00000624790 3129 ntBASIC19.87■□□□□ 0.77
VIMP08670 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC19.87■□□□□ 0.77
VIMP08670 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VIMP08670 AC116050.2-201ENST00000612102 1779 ntBASIC19.87■□□□□ 0.77
VIMP08670 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC19.87■□□□□ 0.77
VIMP08670 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC19.87■□□□□ 0.77
VIMP08670 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms