Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LDLRP01130 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC19.1■□□□□ 0.65
LDLRP01130 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
LDLRP01130 AP000974.1-201ENST00000623909 2387 ntBASIC19.1■□□□□ 0.65
LDLRP01130 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.09■□□□□ 0.65
LDLRP01130 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
LDLRP01130 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC19.09■□□□□ 0.65
LDLRP01130 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
LDLRP01130 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.09■□□□□ 0.65
LDLRP01130 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC19.09■□□□□ 0.65
LDLRP01130 CYP2T1P-201ENST00000432607 1285 ntBASIC19.09■□□□□ 0.65
LDLRP01130 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.09■□□□□ 0.65
LDLRP01130 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.09■□□□□ 0.65
LDLRP01130 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC19.09■□□□□ 0.65
LDLRP01130 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC19.09■□□□□ 0.65
LDLRP01130 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LDLRP01130 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
LDLRP01130 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
LDLRP01130 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
LDLRP01130 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
LDLRP01130 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LDLRP01130 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC19.09■□□□□ 0.65
LDLRP01130 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
LDLRP01130 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
LDLRP01130 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
LDLRP01130 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
LDLRP01130 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC19.08■□□□□ 0.65
LDLRP01130 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
LDLRP01130 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
LDLRP01130 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
LDLRP01130 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC19.08■□□□□ 0.65
LDLRP01130 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LDLRP01130 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC19.08■□□□□ 0.64
LDLRP01130 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC19.08■□□□□ 0.64
LDLRP01130 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC19.08■□□□□ 0.64
LDLRP01130 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
LDLRP01130 BET1L-204ENST00000410108 637 ntTSL 3 BASIC19.08■□□□□ 0.64
LDLRP01130 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
LDLRP01130 AL158047.1-201ENST00000445918 881 ntBASIC19.08■□□□□ 0.64
LDLRP01130 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC19.08■□□□□ 0.64
LDLRP01130 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.08■□□□□ 0.64
LDLRP01130 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
LDLRP01130 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
LDLRP01130 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LDLRP01130 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
LDLRP01130 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LDLRP01130 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
LDLRP01130 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC19.08■□□□□ 0.64
LDLRP01130 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
LDLRP01130 AC068338.2-201ENST00000563278 1430 ntBASIC19.08■□□□□ 0.64
LDLRP01130 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.08■□□□□ 0.64
LDLRP01130 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
LDLRP01130 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LDLRP01130 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
LDLRP01130 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC19.07■□□□□ 0.64
LDLRP01130 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LDLRP01130 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LDLRP01130 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LDLRP01130 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LDLRP01130 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
LDLRP01130 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC19.07■□□□□ 0.64
LDLRP01130 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC19.07■□□□□ 0.64
LDLRP01130 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
LDLRP01130 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.07■□□□□ 0.64
LDLRP01130 AC010141.2-201ENST00000452426 721 ntBASIC19.07■□□□□ 0.64
LDLRP01130 AC142381.4-202ENST00000563973 229 ntBASIC19.07■□□□□ 0.64
LDLRP01130 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LDLRP01130 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
LDLRP01130 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
LDLRP01130 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.07■□□□□ 0.64
LDLRP01130 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LDLRP01130 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LDLRP01130 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LDLRP01130 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
LDLRP01130 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LDLRP01130 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC19.07■□□□□ 0.64
LDLRP01130 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LDLRP01130 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
LDLRP01130 TNXA-203ENST00000507684 2038 ntBASIC19.07■□□□□ 0.64
LDLRP01130 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
LDLRP01130 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
LDLRP01130 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC19.06■□□□□ 0.64
LDLRP01130 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
LDLRP01130 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LDLRP01130 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LDLRP01130 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
LDLRP01130 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
LDLRP01130 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.06■□□□□ 0.64
LDLRP01130 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
LDLRP01130 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.06■□□□□ 0.64
LDLRP01130 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC19.06■□□□□ 0.64
LDLRP01130 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LDLRP01130 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC19.06■□□□□ 0.64
LDLRP01130 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC19.06■□□□□ 0.64
LDLRP01130 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LDLRP01130 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
LDLRP01130 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
LDLRP01130 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC19.06■□□□□ 0.64
LDLRP01130 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LDLRP01130 AC055733.4-201ENST00000638462 1354 ntBASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms