Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CLDN3O15551 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CLDN3O15551 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC21.7■■□□□ 1.06
CLDN3O15551 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CLDN3O15551 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC21.7■■□□□ 1.06
CLDN3O15551 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CLDN3O15551 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CLDN3O15551 CALM3-202ENST00000391918 702 ntTSL 2 BASIC21.7■■□□□ 1.06
CLDN3O15551 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC21.7■■□□□ 1.06
CLDN3O15551 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC21.7■■□□□ 1.06
CLDN3O15551 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC21.7■■□□□ 1.06
CLDN3O15551 AC142381.4-202ENST00000563973 229 ntBASIC21.7■■□□□ 1.06
CLDN3O15551 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CLDN3O15551 AL121906.2-201ENST00000621597 723 ntBASIC21.7■■□□□ 1.06
CLDN3O15551 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC21.7■■□□□ 1.06
CLDN3O15551 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CLDN3O15551 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CLDN3O15551 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
CLDN3O15551 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
CLDN3O15551 AL391422.3-201ENST00000603791 2761 ntBASIC21.7■■□□□ 1.06
CLDN3O15551 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CLDN3O15551 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC21.69■■□□□ 1.06
CLDN3O15551 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CLDN3O15551 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CLDN3O15551 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC21.69■■□□□ 1.06
CLDN3O15551 C1QBPP2-201ENST00000528754 825 ntBASIC21.69■■□□□ 1.06
CLDN3O15551 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC21.69■■□□□ 1.06
CLDN3O15551 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
CLDN3O15551 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC21.69■■□□□ 1.06
CLDN3O15551 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC21.69■■□□□ 1.06
CLDN3O15551 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CLDN3O15551 STK25-204ENST00000405585 1643 ntTSL 2 BASIC21.69■■□□□ 1.06
CLDN3O15551 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CLDN3O15551 CD37-204ENST00000535669 1674 ntTSL 2 BASIC21.69■■□□□ 1.06
CLDN3O15551 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CLDN3O15551 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.68■■□□□ 1.06
CLDN3O15551 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
CLDN3O15551 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CLDN3O15551 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CLDN3O15551 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC21.68■■□□□ 1.06
CLDN3O15551 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CLDN3O15551 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
CLDN3O15551 GCSHP5-201ENST00000443090 522 ntBASIC21.68■■□□□ 1.06
CLDN3O15551 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC21.68■■□□□ 1.06
CLDN3O15551 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC21.68■■□□□ 1.06
CLDN3O15551 RPPH1-201ENST00000516869 333 ntBASIC21.68■■□□□ 1.06
CLDN3O15551 PRKY-204ENST00000533551 1019 ntBASIC21.68■■□□□ 1.06
CLDN3O15551 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CLDN3O15551 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC21.68■■□□□ 1.06
CLDN3O15551 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
CLDN3O15551 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
CLDN3O15551 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CLDN3O15551 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC21.68■■□□□ 1.06
CLDN3O15551 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CLDN3O15551 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CLDN3O15551 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC21.68■■□□□ 1.06
CLDN3O15551 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CLDN3O15551 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC21.68■■□□□ 1.06
CLDN3O15551 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
CLDN3O15551 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLDN3O15551 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLDN3O15551 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLDN3O15551 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLDN3O15551 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLDN3O15551 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC21.67■■□□□ 1.06
CLDN3O15551 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC21.67■■□□□ 1.06
CLDN3O15551 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLDN3O15551 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CLDN3O15551 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
CLDN3O15551 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLDN3O15551 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
CLDN3O15551 AL158047.1-201ENST00000445918 881 ntBASIC21.67■■□□□ 1.06
CLDN3O15551 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC21.67■■□□□ 1.06
CLDN3O15551 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC21.67■■□□□ 1.06
CLDN3O15551 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC21.67■■□□□ 1.06
CLDN3O15551 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC21.67■■□□□ 1.06
CLDN3O15551 AL023875.1-201ENST00000640777 796 ntBASIC21.67■■□□□ 1.06
CLDN3O15551 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLDN3O15551 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CLDN3O15551 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
CLDN3O15551 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLDN3O15551 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLDN3O15551 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLDN3O15551 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC21.67■■□□□ 1.06
CLDN3O15551 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
CLDN3O15551 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC21.66■■□□□ 1.06
CLDN3O15551 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CLDN3O15551 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
CLDN3O15551 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
CLDN3O15551 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CLDN3O15551 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CLDN3O15551 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CLDN3O15551 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CLDN3O15551 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CLDN3O15551 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC21.66■■□□□ 1.06
CLDN3O15551 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC21.66■■□□□ 1.06
CLDN3O15551 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CLDN3O15551 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC21.66■■□□□ 1.06
CLDN3O15551 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC21.66■■□□□ 1.06
CLDN3O15551 LY6E-205ENST00000519611 635 ntTSL 3 BASIC21.66■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms