Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC20.29■□□□□ 0.84
CBX4O00257 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
CBX4O00257 AL121906.2-201ENST00000621597 723 ntBASIC20.29■□□□□ 0.84
CBX4O00257 AL023875.1-201ENST00000640777 796 ntBASIC20.29■□□□□ 0.84
CBX4O00257 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC20.29■□□□□ 0.84
CBX4O00257 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CBX4O00257 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.29■□□□□ 0.84
CBX4O00257 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
CBX4O00257 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
CBX4O00257 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CBX4O00257 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CBX4O00257 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC20.28■□□□□ 0.84
CBX4O00257 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CBX4O00257 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC20.28■□□□□ 0.84
CBX4O00257 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.28■□□□□ 0.84
CBX4O00257 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CBX4O00257 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CBX4O00257 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CBX4O00257 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CBX4O00257 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CBX4O00257 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CBX4O00257 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC20.28■□□□□ 0.84
CBX4O00257 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC20.28■□□□□ 0.84
CBX4O00257 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC20.28■□□□□ 0.84
CBX4O00257 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC20.28■□□□□ 0.84
CBX4O00257 AC008550.1-201ENST00000511500 884 ntBASIC20.28■□□□□ 0.84
CBX4O00257 RPPH1-201ENST00000516869 333 ntBASIC20.28■□□□□ 0.84
CBX4O00257 PRKY-204ENST00000533551 1019 ntBASIC20.28■□□□□ 0.84
CBX4O00257 PNN-205ENST00000556530 601 ntTSL 2 BASIC20.28■□□□□ 0.84
CBX4O00257 MAX-217ENST00000557277 728 ntTSL 3 BASIC20.28■□□□□ 0.84
CBX4O00257 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CBX4O00257 AL121829.2-201ENST00000620908 328 ntBASIC20.28■□□□□ 0.84
CBX4O00257 AL359736.2-201ENST00000621992 437 ntBASIC20.28■□□□□ 0.84
CBX4O00257 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CBX4O00257 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CBX4O00257 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CBX4O00257 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CBX4O00257 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.28■□□□□ 0.84
CBX4O00257 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC20.28■□□□□ 0.84
CBX4O00257 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CBX4O00257 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.28■□□□□ 0.84
CBX4O00257 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CBX4O00257 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CBX4O00257 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CBX4O00257 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CBX4O00257 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
CBX4O00257 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CBX4O00257 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CBX4O00257 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
CBX4O00257 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CBX4O00257 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CBX4O00257 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC20.27■□□□□ 0.84
CBX4O00257 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CBX4O00257 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC20.27■□□□□ 0.84
CBX4O00257 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC20.27■□□□□ 0.84
CBX4O00257 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CBX4O00257 FAM197Y4-202ENST00000622692 608 ntBASIC20.27■□□□□ 0.84
CBX4O00257 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CBX4O00257 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CBX4O00257 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CBX4O00257 STK25-204ENST00000405585 1643 ntTSL 2 BASIC20.27■□□□□ 0.83
CBX4O00257 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CBX4O00257 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CBX4O00257 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CBX4O00257 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CBX4O00257 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
CBX4O00257 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC20.26■□□□□ 0.83
CBX4O00257 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CBX4O00257 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CBX4O00257 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CBX4O00257 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CBX4O00257 AC239809.2-201ENST00000415381 517 ntBASIC20.26■□□□□ 0.83
CBX4O00257 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC20.26■□□□□ 0.83
CBX4O00257 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC20.26■□□□□ 0.83
CBX4O00257 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC20.26■□□□□ 0.83
CBX4O00257 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC20.26■□□□□ 0.83
CBX4O00257 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC20.26■□□□□ 0.83
CBX4O00257 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
CBX4O00257 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CBX4O00257 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CBX4O00257 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC20.26■□□□□ 0.83
CBX4O00257 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.26■□□□□ 0.83
CBX4O00257 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
CBX4O00257 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC20.26■□□□□ 0.83
CBX4O00257 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CBX4O00257 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.26■□□□□ 0.83
CBX4O00257 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CBX4O00257 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CBX4O00257 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC20.26■□□□□ 0.83
CBX4O00257 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
CBX4O00257 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
CBX4O00257 MME-217ENST00000616757 1315 ntTSL 5 BASIC20.26■□□□□ 0.83
CBX4O00257 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CBX4O00257 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CBX4O00257 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC20.25■□□□□ 0.83
CBX4O00257 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
CBX4O00257 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CBX4O00257 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CBX4O00257 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CBX4O00257 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms