Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 OLFML2A-201ENST00000288815 5964 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
VPS13CQ709C8 CACNA1S-202ENST00000367338 5996 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
VPS13CQ709C8 ZNF264-201ENST00000263095 12163 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
VPS13CQ709C8 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC5.05□□□□□ -1.6
VPS13CQ709C8 ZNF836-201ENST00000322146 2811 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
VPS13CQ709C8 ESRRG-212ENST00000463665 3359 ntTSL 2 BASIC5.05□□□□□ -1.6
VPS13CQ709C8 SRRM1P3-201ENST00000426911 2678 ntBASIC5.05□□□□□ -1.6
VPS13CQ709C8 ATP13A5-201ENST00000342358 4027 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
VPS13CQ709C8 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC5.05□□□□□ -1.6
VPS13CQ709C8 TMED8-201ENST00000216468 7784 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
VPS13CQ709C8 SERBP1-203ENST00000370994 6676 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
VPS13CQ709C8 AK4P4-201ENST00000419465 646 ntBASIC5.05□□□□□ -1.6
VPS13CQ709C8 Z98949.3-201ENST00000436423 472 ntTSL 5 BASIC5.05□□□□□ -1.6
VPS13CQ709C8 AL671862.1-201ENST00000515851 349 ntBASIC5.05□□□□□ -1.6
VPS13CQ709C8 AC115837.1-201ENST00000517662 1001 ntBASIC5.05□□□□□ -1.6
VPS13CQ709C8 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC5.05□□□□□ -1.6
VPS13CQ709C8 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC5.05□□□□□ -1.6
VPS13CQ709C8 MIR3189-201ENST00000578735 73 ntBASIC5.05□□□□□ -1.6
VPS13CQ709C8 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC5.05□□□□□ -1.6
VPS13CQ709C8 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC5.05□□□□□ -1.6
VPS13CQ709C8 RN7SL544P-201ENST00000617232 284 ntBASIC5.05□□□□□ -1.6
VPS13CQ709C8 RN7SL763P-201ENST00000620922 284 ntBASIC5.05□□□□□ -1.6
VPS13CQ709C8 AC007683.2-201ENST00000624681 714 ntBASIC5.05□□□□□ -1.6
VPS13CQ709C8 AC183089.2-201ENST00000637931 916 ntBASIC5.05□□□□□ -1.6
VPS13CQ709C8 ECHDC1-210ENST00000454859 2341 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
VPS13CQ709C8 AL357568.1-201ENST00000421530 1963 ntTSL 2 BASIC5.05□□□□□ -1.6
VPS13CQ709C8 DNAJC6-202ENST00000371069 5365 ntAPPRIS P4 TSL 1 (best) BASIC5.05□□□□□ -1.6
VPS13CQ709C8 SAR1A-206ENST00000431664 2810 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
VPS13CQ709C8 TPR-201ENST00000367478 9708 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
VPS13CQ709C8 LINC01291-203ENST00000435984 565 ntTSL 3 BASIC5.05□□□□□ -1.6
VPS13CQ709C8 AC024558.1-201ENST00000505008 528 ntBASIC5.05□□□□□ -1.6
VPS13CQ709C8 C5orf64-204ENST00000507461 535 ntTSL 4 BASIC5.05□□□□□ -1.6
VPS13CQ709C8 PCNAP4-201ENST00000532690 730 ntBASIC5.05□□□□□ -1.6
VPS13CQ709C8 AL049779.2-201ENST00000553847 315 ntBASIC5.05□□□□□ -1.6
VPS13CQ709C8 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC5.05□□□□□ -1.6
VPS13CQ709C8 RN7SL708P-201ENST00000580952 299 ntBASIC5.05□□□□□ -1.6
VPS13CQ709C8 ELOCP28-201ENST00000590044 317 ntBASIC5.05□□□□□ -1.6
VPS13CQ709C8 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC5.05□□□□□ -1.6
VPS13CQ709C8 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC5.05□□□□□ -1.6
VPS13CQ709C8 ZNF888-202ENST00000638862 4195 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
VPS13CQ709C8 AC114776.1-201ENST00000414159 4395 ntTSL 5 BASIC5.05□□□□□ -1.6
VPS13CQ709C8 USP50-203ENST00000532404 1386 ntAPPRIS P2 TSL 5 BASIC5.05□□□□□ -1.6
VPS13CQ709C8 ADA2-210ENST00000610390 4137 ntTSL 5 BASIC5.05□□□□□ -1.6
VPS13CQ709C8 TSC22D2-201ENST00000361875 11154 ntAPPRIS P2 TSL 1 (best) BASIC5.05□□□□□ -1.6
VPS13CQ709C8 MUC6-201ENST00000421673 8006 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
VPS13CQ709C8 RBMXL1-202ENST00000399794 5084 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
VPS13CQ709C8 AL157831.2-201ENST00000564681 3095 ntBASIC5.04□□□□□ -1.6
VPS13CQ709C8 OR5BA1P-202ENST00000641215 5464 ntBASIC5.04□□□□□ -1.6
VPS13CQ709C8 AC012254.3-201ENST00000591183 2117 ntBASIC5.04□□□□□ -1.6
VPS13CQ709C8 MED12-202ENST00000374080 6795 ntAPPRIS P2 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS13CQ709C8 RBBP4P4-201ENST00000398588 1289 ntBASIC5.04□□□□□ -1.6
VPS13CQ709C8 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC5.04□□□□□ -1.6
VPS13CQ709C8 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
VPS13CQ709C8 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC5.04□□□□□ -1.6
VPS13CQ709C8 RPL36AP39-201ENST00000445859 318 ntBASIC5.04□□□□□ -1.6
VPS13CQ709C8 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC5.04□□□□□ -1.6
VPS13CQ709C8 IGKV1D-22-201ENST00000518953 324 ntBASIC5.04□□□□□ -1.6
VPS13CQ709C8 AC078789.1-201ENST00000547084 477 ntTSL 3 BASIC5.04□□□□□ -1.6
VPS13CQ709C8 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC5.04□□□□□ -1.6
VPS13CQ709C8 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC5.04□□□□□ -1.6
VPS13CQ709C8 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC5.04□□□□□ -1.6
VPS13CQ709C8 TMEM167A-201ENST00000502346 4630 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS13CQ709C8 AC011933.2-201ENST00000578539 2790 ntBASIC5.04□□□□□ -1.6
VPS13CQ709C8 GIT2-205ENST00000457474 5291 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
VPS13CQ709C8 OR4C1P-202ENST00000641065 1569 ntBASIC5.04□□□□□ -1.6
VPS13CQ709C8 ZMYND8-211ENST00000446994 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS13CQ709C8 CUL4A-212ENST00000617546 5666 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
VPS13CQ709C8 CACNA1E-201ENST00000357570 7064 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
VPS13CQ709C8 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC5.04□□□□□ -1.6
VPS13CQ709C8 AC125238.2-201ENST00000430003 1440 ntBASIC5.04□□□□□ -1.6
VPS13CQ709C8 MEIS1-202ENST00000398506 3530 ntTSL 5 BASIC5.04□□□□□ -1.6
VPS13CQ709C8 CLCA3P-203ENST00000490028 2781 ntBASIC5.04□□□□□ -1.6
VPS13CQ709C8 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC5.04□□□□□ -1.6
VPS13CQ709C8 MAP3K7CL-209ENST00000399947 2003 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
VPS13CQ709C8 MEP1B-201ENST00000269202 2312 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS13CQ709C8 UBAP2L-203ENST00000361546 3864 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS13CQ709C8 KIAA0040-201ENST00000423313 4564 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS13CQ709C8 ZNF268-201ENST00000228289 3543 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS13CQ709C8 TRIM55-203ENST00000350034 1177 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
VPS13CQ709C8 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
VPS13CQ709C8 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC5.04□□□□□ -1.6
VPS13CQ709C8 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC5.04□□□□□ -1.6
VPS13CQ709C8 VN1R54P-201ENST00000435210 1049 ntBASIC5.04□□□□□ -1.6
VPS13CQ709C8 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC5.04□□□□□ -1.6
VPS13CQ709C8 AC099786.1-201ENST00000446238 670 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
VPS13CQ709C8 OR7E116P-201ENST00000448529 957 ntBASIC5.04□□□□□ -1.6
VPS13CQ709C8 AZGP1P2-201ENST00000454506 345 ntBASIC5.04□□□□□ -1.6
VPS13CQ709C8 RN7SL72P-201ENST00000460697 269 ntBASIC5.04□□□□□ -1.6
VPS13CQ709C8 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC5.04□□□□□ -1.6
VPS13CQ709C8 AC027229.1-201ENST00000583887 253 ntBASIC5.04□□□□□ -1.6
VPS13CQ709C8 AC119403.2-201ENST00000590960 598 ntBASIC5.04□□□□□ -1.6
VPS13CQ709C8 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC5.04□□□□□ -1.6
VPS13CQ709C8 AC068870.2-201ENST00000620635 389 ntBASIC5.04□□□□□ -1.6
VPS13CQ709C8 MKKS-201ENST00000347364 6714 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS13CQ709C8 NR5A2-206ENST00000544748 4775 ntAPPRIS ALT1 TSL 2 BASIC5.04□□□□□ -1.6
VPS13CQ709C8 SPATA31A7-206ENST00000619167 4256 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS13CQ709C8 PDPR-201ENST00000288050 9255 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
VPS13CQ709C8 TNS1-221ENST00000615025 6488 ntTSL 5 BASIC5.04□□□□□ -1.6
VPS13CQ709C8 OR2M1P-201ENST00000318104 951 ntBASIC5.04□□□□□ -1.6
VPS13CQ709C8 U3.2-201ENST00000362981 210 ntBASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms