Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 CEP41-213ENST00000489512 3161 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
USP39Q53GS9 MTND5P12-201ENST00000502851 1449 ntBASIC7.1□□□□□ -1.27
USP39Q53GS9 ENSA-201ENST00000271690 2818 ntAPPRIS ALT1 TSL 1 (best) BASIC7.09□□□□□ -1.27
USP39Q53GS9 AC092111.1-201ENST00000618256 3358 ntBASIC7.09□□□□□ -1.27
USP39Q53GS9 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC7.09□□□□□ -1.27
USP39Q53GS9 FGG-201ENST00000336098 1659 ntTSL 2 BASIC7.09□□□□□ -1.27
USP39Q53GS9 KAT14-202ENST00000435364 3618 ntAPPRIS P2 TSL 1 (best) BASIC7.09□□□□□ -1.27
USP39Q53GS9 ZNF300-204ENST00000427179 4155 ntTSL 2 BASIC7.09□□□□□ -1.27
USP39Q53GS9 LYSMD3-203ENST00000500869 3863 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
USP39Q53GS9 IARS-205ENST00000443024 4341 ntTSL 5 BASIC7.09□□□□□ -1.27
USP39Q53GS9 PDE1C-203ENST00000396184 8852 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
USP39Q53GS9 RGPD3-201ENST00000304514 5510 ntAPPRIS ALT2 TSL 2 BASIC7.09□□□□□ -1.27
USP39Q53GS9 HDAC9-218ENST00000456174 2307 ntTSL 2 BASIC7.09□□□□□ -1.27
USP39Q53GS9 CCL1-201ENST00000225842 592 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
USP39Q53GS9 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
USP39Q53GS9 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC7.09□□□□□ -1.27
USP39Q53GS9 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC7.09□□□□□ -1.27
USP39Q53GS9 PLGLB2-201ENST00000359481 1173 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
USP39Q53GS9 HHLA3-201ENST00000359875 898 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.27
USP39Q53GS9 RN7SKP130-201ENST00000364924 301 ntBASIC7.09□□□□□ -1.27
USP39Q53GS9 AP000812.1-201ENST00000378140 477 ntTSL 3 BASIC7.09□□□□□ -1.27
USP39Q53GS9 TRBV6-7-201ENST00000390373 344 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
USP39Q53GS9 SDHC-203ENST00000392169 369 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
USP39Q53GS9 CD200R1L-201ENST00000398214 1296 ntAPPRIS P3 TSL 1 (best) BASIC7.09□□□□□ -1.27
USP39Q53GS9 AL050305.1-201ENST00000399993 1230 ntBASIC7.09□□□□□ -1.27
USP39Q53GS9 AL359715.1-201ENST00000404330 555 ntBASIC7.09□□□□□ -1.27
USP39Q53GS9 AC004012.1-201ENST00000416593 534 ntTSL 4 BASIC7.09□□□□□ -1.27
USP39Q53GS9 GEMIN2P2-201ENST00000418195 715 ntBASIC7.09□□□□□ -1.27
USP39Q53GS9 THEM7P-201ENST00000419556 672 ntBASIC7.09□□□□□ -1.27
USP39Q53GS9 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC7.09□□□□□ -1.27
USP39Q53GS9 UQCRHP1-204ENST00000424609 274 ntBASIC7.09□□□□□ -1.27
USP39Q53GS9 TRBV29OR9-2-201ENST00000427589 333 ntBASIC7.09□□□□□ -1.27
USP39Q53GS9 AC096677.2-201ENST00000430471 598 ntTSL 5 BASIC7.09□□□□□ -1.27
USP39Q53GS9 E2F3-IT1-201ENST00000433182 400 ntTSL 3 BASIC7.09□□□□□ -1.27
USP39Q53GS9 LINC01393-202ENST00000435981 1187 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
USP39Q53GS9 AC114755.4-201ENST00000439114 443 ntBASIC7.09□□□□□ -1.27
USP39Q53GS9 AC092601.1-201ENST00000444526 383 ntBASIC7.09□□□□□ -1.27
USP39Q53GS9 FCF1P7-201ENST00000451185 558 ntBASIC7.09□□□□□ -1.27
USP39Q53GS9 HRAT17-202ENST00000451962 687 ntTSL 5 BASIC7.09□□□□□ -1.27
USP39Q53GS9 BBIP1-208ENST00000454061 812 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
USP39Q53GS9 PSPC1P2-201ENST00000455130 225 ntBASIC7.09□□□□□ -1.27
USP39Q53GS9 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC7.09□□□□□ -1.27
USP39Q53GS9 AL050331.2-201ENST00000457319 421 ntTSL 3 BASIC7.09□□□□□ -1.27
USP39Q53GS9 RBMY2HP-201ENST00000457961 720 ntBASIC7.09□□□□□ -1.27
USP39Q53GS9 AC026336.1-201ENST00000466577 351 ntBASIC7.09□□□□□ -1.27
USP39Q53GS9 RPL23P10-201ENST00000468780 412 ntBASIC7.09□□□□□ -1.27
USP39Q53GS9 RN7SL70P-201ENST00000478322 302 ntBASIC7.09□□□□□ -1.27
USP39Q53GS9 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
USP39Q53GS9 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
USP39Q53GS9 NDUFB2-215ENST00000482954 544 ntTSL 3 BASIC7.09□□□□□ -1.27
USP39Q53GS9 AC015524.1-201ENST00000491585 472 ntBASIC7.09□□□□□ -1.27
USP39Q53GS9 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC7.09□□□□□ -1.27
USP39Q53GS9 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC7.09□□□□□ -1.27
USP39Q53GS9 AC093535.1-203ENST00000512500 730 ntTSL 3 BASIC7.09□□□□□ -1.27
USP39Q53GS9 AC105150.1-201ENST00000518011 551 ntTSL 3 BASIC7.09□□□□□ -1.27
USP39Q53GS9 IGKV2D-38-201ENST00000518423 240 ntBASIC7.09□□□□□ -1.27
USP39Q53GS9 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
USP39Q53GS9 CIR1P1-201ENST00000524055 1133 ntBASIC7.09□□□□□ -1.27
USP39Q53GS9 AC091515.1-201ENST00000548110 679 ntBASIC7.09□□□□□ -1.27
USP39Q53GS9 MTND3P12-201ENST00000559068 328 ntBASIC7.09□□□□□ -1.27
USP39Q53GS9 AC015801.1-201ENST00000585651 153 ntBASIC7.09□□□□□ -1.27
USP39Q53GS9 LINC01841-201ENST00000586698 573 ntTSL 4 BASIC7.09□□□□□ -1.27
USP39Q53GS9 LINC02028-206ENST00000593326 810 ntTSL 5 BASIC7.09□□□□□ -1.27
USP39Q53GS9 AP000654.1-201ENST00000602510 1192 ntTSL 5 BASIC7.09□□□□□ -1.27
USP39Q53GS9 AC091167.5-201ENST00000605689 894 ntBASIC7.09□□□□□ -1.27
USP39Q53GS9 AC034236.3-201ENST00000605999 461 ntBASIC7.09□□□□□ -1.27
USP39Q53GS9 AC004448.4-210ENST00000610229 833 ntTSL 5 BASIC7.09□□□□□ -1.27
USP39Q53GS9 AC008833.1-201ENST00000611633 691 ntBASIC7.09□□□□□ -1.27
USP39Q53GS9 GLYATL1-219ENST00000612196 909 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.27
USP39Q53GS9 HOXA11-AS1_3.1-201ENST00000613383 98 ntBASIC7.09□□□□□ -1.27
USP39Q53GS9 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC7.09□□□□□ -1.27
USP39Q53GS9 LINC01676-209ENST00000623043 896 ntTSL 4 BASIC7.09□□□□□ -1.27
USP39Q53GS9 AL139254.3-201ENST00000641097 674 ntBASIC7.09□□□□□ -1.27
USP39Q53GS9 KLF7-201ENST00000309446 8362 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
USP39Q53GS9 AC004988.1-201ENST00000415237 1771 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
USP39Q53GS9 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
USP39Q53GS9 TAT-201ENST00000355962 3983 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
USP39Q53GS9 KNG1-201ENST00000265023 3435 ntAPPRIS ALT1 TSL 2 BASIC7.09□□□□□ -1.27
USP39Q53GS9 SPARCL1-201ENST00000282470 2906 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
USP39Q53GS9 BEST3-212ENST00000553096 2929 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
USP39Q53GS9 IFT74-204ENST00000443698 2163 ntAPPRIS P1 TSL 5 BASIC7.09□□□□□ -1.27
USP39Q53GS9 STT3A-214ENST00000531491 2160 ntTSL 2 BASIC7.09□□□□□ -1.27
USP39Q53GS9 MCTP2-201ENST00000357742 7555 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.28
USP39Q53GS9 PARN-201ENST00000341484 2100 ntTSL 2 BASIC7.09□□□□□ -1.28
USP39Q53GS9 SAR1A-206ENST00000431664 2810 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.28
USP39Q53GS9 OR9I1-203ENST00000641478 3027 ntAPPRIS P1 BASIC7.09□□□□□ -1.28
USP39Q53GS9 DNA2-203ENST00000399180 3207 ntTSL 2 BASIC7.08□□□□□ -1.28
USP39Q53GS9 COQ10B-202ENST00000409010 1355 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
USP39Q53GS9 ORC3-206ENST00000546266 2470 ntTSL 2 BASIC7.08□□□□□ -1.28
USP39Q53GS9 SEPT14-201ENST00000388975 3785 ntAPPRIS P1 TSL 2 BASIC7.08□□□□□ -1.28
USP39Q53GS9 LDHA-206ENST00000430553 1310 ntTSL 2 BASIC7.08□□□□□ -1.28
USP39Q53GS9 GOLGA6L22-204ENST00000622895 4178 ntAPPRIS P5 TSL 5 BASIC7.08□□□□□ -1.28
USP39Q53GS9 TMEM230-204ENST00000379277 1536 ntAPPRIS P1 TSL 3 BASIC7.08□□□□□ -1.28
USP39Q53GS9 CXCR6-204ENST00000458629 2805 ntAPPRIS P1 BASIC7.08□□□□□ -1.28
USP39Q53GS9 CSDE1-218ENST00000610726 4312 ntTSL 5 BASIC7.08□□□□□ -1.28
USP39Q53GS9 AADACL3-201ENST00000359318 3662 ntAPPRIS P1 TSL 3 BASIC7.08□□□□□ -1.28
USP39Q53GS9 KIAA1549L-201ENST00000265654 4492 ntAPPRIS ALT2 TSL 2 BASIC7.08□□□□□ -1.28
USP39Q53GS9 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
USP39Q53GS9 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
USP39Q53GS9 FAM204BP-201ENST00000369171 701 ntBASIC7.08□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 148.9 ms