Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 CLEC12B-202ENST00000396502 3029 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
CUX1P39880 MAPK10-377ENST00000642006 2752 ntBASIC10.7□□□□□ -0.7
CUX1P39880 PSG10P-201ENST00000501199 1500 ntBASIC10.7□□□□□ -0.7
CUX1P39880 RNA5SP500-201ENST00000364486 119 ntBASIC10.7□□□□□ -0.7
CUX1P39880 RNA5SP178-201ENST00000410380 128 ntBASIC10.7□□□□□ -0.7
CUX1P39880 RN7SKP278-201ENST00000410504 342 ntBASIC10.7□□□□□ -0.7
CUX1P39880 RN7SKP286-201ENST00000410894 299 ntBASIC10.7□□□□□ -0.7
CUX1P39880 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC10.7□□□□□ -0.7
CUX1P39880 SUMO2P3-201ENST00000438311 288 ntBASIC10.7□□□□□ -0.7
CUX1P39880 RN7SL717P-201ENST00000478343 297 ntBASIC10.7□□□□□ -0.7
CUX1P39880 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC10.7□□□□□ -0.7
CUX1P39880 CASC21-201ENST00000521586 290 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
CUX1P39880 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC10.7□□□□□ -0.7
CUX1P39880 RPA2P1-201ENST00000556557 721 ntBASIC10.7□□□□□ -0.7
CUX1P39880 AC135626.1-201ENST00000556983 435 ntBASIC10.7□□□□□ -0.7
CUX1P39880 AC090236.2-201ENST00000587933 1101 ntBASIC10.7□□□□□ -0.7
CUX1P39880 AC015813.3-201ENST00000584805 6113 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
CUX1P39880 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC10.7□□□□□ -0.7
CUX1P39880 SFTPD-AS1-201ENST00000608229 5001 ntBASIC10.7□□□□□ -0.7
CUX1P39880 NEK2P4-201ENST00000425793 1329 ntBASIC10.7□□□□□ -0.7
CUX1P39880 AL512310.3-201ENST00000547023 1335 ntBASIC10.7□□□□□ -0.7
CUX1P39880 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC10.7□□□□□ -0.7
CUX1P39880 JAM3-202ENST00000441717 3363 ntTSL 2 BASIC10.7□□□□□ -0.7
CUX1P39880 HSD17B4-212ENST00000509514 2314 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
CUX1P39880 CTNND1-219ENST00000528621 5907 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
CUX1P39880 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC10.7□□□□□ -0.7
CUX1P39880 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
CUX1P39880 TEX14-201ENST00000240361 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
CUX1P39880 LINC00506-203ENST00000629295 4300 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
CUX1P39880 HTR2A-203ENST00000543956 4689 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
CUX1P39880 POM121L2-202ENST00000444565 3108 ntAPPRIS P2 BASIC10.69□□□□□ -0.7
CUX1P39880 POT1-201ENST00000357628 4080 ntAPPRIS P1 TSL 2 BASIC10.69□□□□□ -0.7
CUX1P39880 FBXW10-202ENST00000308799 3456 ntAPPRIS ALT2 TSL 2 BASIC10.69□□□□□ -0.7
CUX1P39880 CEP112-201ENST00000317442 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
CUX1P39880 MIR1203-201ENST00000408812 85 ntBASIC10.69□□□□□ -0.7
CUX1P39880 AC096537.2-201ENST00000413707 714 ntBASIC10.69□□□□□ -0.7
CUX1P39880 HNRNPA1P18-201ENST00000433537 927 ntBASIC10.69□□□□□ -0.7
CUX1P39880 GAPDHP75-201ENST00000433910 943 ntBASIC10.69□□□□□ -0.7
CUX1P39880 KRTAP8-2P-201ENST00000440620 186 ntBASIC10.69□□□□□ -0.7
CUX1P39880 RN7SL834P-201ENST00000461450 286 ntBASIC10.69□□□□□ -0.7
CUX1P39880 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC10.69□□□□□ -0.7
CUX1P39880 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC10.69□□□□□ -0.7
CUX1P39880 AC078789.1-201ENST00000547084 477 ntTSL 3 BASIC10.69□□□□□ -0.7
CUX1P39880 AC090709.1-201ENST00000548384 716 ntTSL 3 BASIC10.69□□□□□ -0.7
CUX1P39880 AL121579.2-201ENST00000555466 590 ntBASIC10.69□□□□□ -0.7
CUX1P39880 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC10.69□□□□□ -0.7
CUX1P39880 AL136228.1-201ENST00000622221 319 ntBASIC10.69□□□□□ -0.7
CUX1P39880 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC10.69□□□□□ -0.7
CUX1P39880 TMCC3-203ENST00000551457 4361 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
CUX1P39880 ALMS1-204ENST00000484298 12595 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
CUX1P39880 FBXL13-201ENST00000313221 2744 ntTSL 2 BASIC10.69□□□□□ -0.7
CUX1P39880 ARHGAP15-201ENST00000295095 1775 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
CUX1P39880 CACNA1D-201ENST00000288139 9341 ntAPPRIS P3 TSL 1 (best) BASIC10.69□□□□□ -0.7
CUX1P39880 IPO11-201ENST00000325324 4356 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
CUX1P39880 AL512590.3-202ENST00000534123 6463 ntTSL 2 BASIC10.69□□□□□ -0.7
CUX1P39880 DCSTAMP-201ENST00000297581 1953 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
CUX1P39880 NCOA4-205ENST00000583565 2371 ntAPPRIS P1 TSL 2 BASIC10.69□□□□□ -0.7
CUX1P39880 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC10.68□□□□□ -0.7
CUX1P39880 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC10.68□□□□□ -0.7
CUX1P39880 BX284632.2-201ENST00000421091 399 ntBASIC10.68□□□□□ -0.7
CUX1P39880 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC10.68□□□□□ -0.7
CUX1P39880 AL512605.1-202ENST00000441919 381 ntBASIC10.68□□□□□ -0.7
CUX1P39880 AL359955.2-201ENST00000445380 353 ntBASIC10.68□□□□□ -0.7
CUX1P39880 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC10.68□□□□□ -0.7
CUX1P39880 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC10.68□□□□□ -0.7
CUX1P39880 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC10.68□□□□□ -0.7
CUX1P39880 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC10.68□□□□□ -0.7
CUX1P39880 BRDT-202ENST00000362005 3409 ntAPPRIS P3 TSL 1 (best) BASIC10.68□□□□□ -0.7
CUX1P39880 AC087280.2-201ENST00000637205 4822 ntTSL 5 BASIC10.68□□□□□ -0.7
CUX1P39880 DGKK-201ENST00000611977 7407 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
CUX1P39880 CLDN12-201ENST00000287916 3565 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
CUX1P39880 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
CUX1P39880 SLC4A4-204ENST00000425175 7596 ntTSL 5 BASIC10.68□□□□□ -0.7
CUX1P39880 IL1B-201ENST00000263341 1631 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
CUX1P39880 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC10.68□□□□□ -0.7
CUX1P39880 CASC19-228ENST00000641414 1684 ntBASIC10.68□□□□□ -0.7
CUX1P39880 ZMYND8-221ENST00000619049 4027 ntTSL 5 BASIC10.68□□□□□ -0.7
CUX1P39880 GABRA1-211ENST00000635880 1739 ntAPPRIS P1 TSL 5 BASIC10.68□□□□□ -0.7
CUX1P39880 OPALIN-201ENST00000371172 3557 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
CUX1P39880 USP48-203ENST00000374732 3037 ntTSL 2 BASIC10.68□□□□□ -0.7
CUX1P39880 C5orf24-201ENST00000338051 4270 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
CUX1P39880 TMC5-206ENST00000561503 2487 ntTSL 2 BASIC10.68□□□□□ -0.7
CUX1P39880 ZNF449-201ENST00000339249 3773 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
CUX1P39880 CD46-204ENST00000357714 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
CUX1P39880 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC10.68□□□□□ -0.7
CUX1P39880 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC10.68□□□□□ -0.7
CUX1P39880 AC005077.1-201ENST00000449226 375 ntBASIC10.68□□□□□ -0.7
CUX1P39880 MAGOHB-204ENST00000539554 666 ntTSL 3 BASIC10.68□□□□□ -0.7
CUX1P39880 AP005119.1-201ENST00000580956 292 ntBASIC10.68□□□□□ -0.7
CUX1P39880 AC022106.1-201ENST00000612834 766 ntBASIC10.68□□□□□ -0.7
CUX1P39880 RBMY1HP-201ENST00000382759 1389 ntBASIC10.68□□□□□ -0.7
CUX1P39880 ZNF100-202ENST00000358296 5745 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
CUX1P39880 METTL14-201ENST00000388822 6669 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
CUX1P39880 C14orf105-201ENST00000216445 3082 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
CUX1P39880 AC009948.5-201ENST00000624360 4406 ntBASIC10.67□□□□□ -0.7
CUX1P39880 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
CUX1P39880 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
CUX1P39880 CCNT2-202ENST00000295238 4491 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
CUX1P39880 EPPK1-202ENST00000615648 16002 ntAPPRIS P2 TSL 5 BASIC10.67□□□□□ -0.7
CUX1P39880 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC10.67□□□□□ -0.7
Retrieved 100 of 98,524 protein–RNA pairs in 70.2 ms