Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 ARHGAP11A-202ENST00000543522 3152 ntTSL 2 BASIC7.71□□□□□ -1.17
MSX1P28360 ZNF611-203ENST00000540744 4417 ntAPPRIS P1 TSL 4 BASIC7.71□□□□□ -1.17
MSX1P28360 HOXD8-202ENST00000429017 1608 ntTSL 2 BASIC7.71□□□□□ -1.17
MSX1P28360 KLRC1-207ENST00000544822 1600 ntAPPRIS P4 TSL 1 (best) BASIC7.71□□□□□ -1.17
MSX1P28360 TP63-203ENST00000354600 4668 ntAPPRIS P2 TSL 1 (best) BASIC7.71□□□□□ -1.17
MSX1P28360 TACC2-226ENST00000513429 4114 ntTSL 1 (best) BASIC7.71□□□□□ -1.17
MSX1P28360 AL137782.1-201ENST00000563635 4128 ntTSL 5 BASIC7.71□□□□□ -1.17
MSX1P28360 CD180-201ENST00000256447 5388 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.17
MSX1P28360 LRRC37A9P-201ENST00000603850 5376 ntBASIC7.71□□□□□ -1.17
MSX1P28360 CIITA-201ENST00000324288 11952 ntAPPRIS P3 TSL 1 (best) BASIC7.71□□□□□ -1.18
MSX1P28360 NASP-203ENST00000372052 1458 ntAPPRIS ALT2 TSL 5 BASIC7.71□□□□□ -1.18
MSX1P28360 OR51J1-201ENST00000332043 951 ntAPPRIS P1 BASIC7.71□□□□□ -1.18
MSX1P28360 RNA5SP71-201ENST00000362967 126 ntBASIC7.71□□□□□ -1.18
MSX1P28360 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC7.71□□□□□ -1.18
MSX1P28360 MT-TD-201ENST00000387419 68 ntBASIC7.71□□□□□ -1.18
MSX1P28360 SNORD86-201ENST00000391196 86 ntBASIC7.71□□□□□ -1.18
MSX1P28360 TMEM126B-202ENST00000393375 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC7.71□□□□□ -1.18
MSX1P28360 RFKP1-201ENST00000400940 428 ntBASIC7.71□□□□□ -1.18
MSX1P28360 VN2R10P-201ENST00000411871 853 ntBASIC7.71□□□□□ -1.18
MSX1P28360 AL356968.2-201ENST00000412769 1257 ntBASIC7.71□□□□□ -1.18
MSX1P28360 OR10U1P-201ENST00000414690 905 ntBASIC7.71□□□□□ -1.18
MSX1P28360 AC106870.2-201ENST00000421411 691 ntTSL 3 BASIC7.71□□□□□ -1.18
MSX1P28360 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
MSX1P28360 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC7.71□□□□□ -1.18
MSX1P28360 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC7.71□□□□□ -1.18
MSX1P28360 BTF3P10-201ENST00000433415 495 ntBASIC7.71□□□□□ -1.18
MSX1P28360 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC7.71□□□□□ -1.18
MSX1P28360 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC7.71□□□□□ -1.18
MSX1P28360 HAUS6P3-201ENST00000456660 1107 ntBASIC7.71□□□□□ -1.18
MSX1P28360 DISC1-IT1-201ENST00000456782 762 ntTSL 3 BASIC7.71□□□□□ -1.18
MSX1P28360 RPS3AP17-201ENST00000472594 777 ntBASIC7.71□□□□□ -1.18
MSX1P28360 RPL9P6-201ENST00000492764 598 ntBASIC7.71□□□□□ -1.18
MSX1P28360 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC7.71□□□□□ -1.18
MSX1P28360 AC027338.2-201ENST00000504382 526 ntBASIC7.71□□□□□ -1.18
MSX1P28360 AC093824.1-201ENST00000508796 343 ntBASIC7.71□□□□□ -1.18
MSX1P28360 AC103770.1-201ENST00000517884 833 ntTSL 3 BASIC7.71□□□□□ -1.18
MSX1P28360 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC7.71□□□□□ -1.18
MSX1P28360 IGHVIV-44-1-201ENST00000519334 338 ntBASIC7.71□□□□□ -1.18
MSX1P28360 AP003499.1-201ENST00000527217 574 ntBASIC7.71□□□□□ -1.18
MSX1P28360 CTNNA3-205ENST00000545309 555 ntTSL 5 BASIC7.71□□□□□ -1.18
MSX1P28360 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC7.71□□□□□ -1.18
MSX1P28360 AC099684.3-201ENST00000574483 560 ntTSL 4 BASIC7.71□□□□□ -1.18
MSX1P28360 MIR3912-201ENST00000577566 105 ntBASIC7.71□□□□□ -1.18
MSX1P28360 MIR4528-201ENST00000577763 90 ntBASIC7.71□□□□□ -1.18
MSX1P28360 AC010761.3-201ENST00000578819 499 ntTSL 3 BASIC7.71□□□□□ -1.18
MSX1P28360 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC7.71□□□□□ -1.18
MSX1P28360 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC7.71□□□□□ -1.18
MSX1P28360 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC7.71□□□□□ -1.18
MSX1P28360 AL049840.5-201ENST00000602827 552 ntBASIC7.71□□□□□ -1.18
MSX1P28360 MIR6872-201ENST00000612981 62 ntBASIC7.71□□□□□ -1.18
MSX1P28360 AC009159.1-201ENST00000618386 642 ntBASIC7.71□□□□□ -1.18
MSX1P28360 AC009093.6-201ENST00000622268 553 ntBASIC7.71□□□□□ -1.18
MSX1P28360 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC7.71□□□□□ -1.18
MSX1P28360 FRG1KP-201ENST00000623592 341 ntBASIC7.71□□□□□ -1.18
MSX1P28360 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC7.71□□□□□ -1.18
MSX1P28360 AC024614.3-201ENST00000637860 256 ntBASIC7.71□□□□□ -1.18
MSX1P28360 KRT7-214ENST00000638501 398 ntTSL 5 BASIC7.71□□□□□ -1.18
MSX1P28360 ANKRD42-202ENST00000393389 4066 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
MSX1P28360 BZW1-203ENST00000409600 6875 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
MSX1P28360 VTI1A-202ENST00000432306 1738 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
MSX1P28360 PSG3-204ENST00000595140 1724 ntAPPRIS ALT2 TSL 5 BASIC7.71□□□□□ -1.18
MSX1P28360 DNAH10-209ENST00000614082 3484 ntTSL 5 BASIC7.71□□□□□ -1.18
MSX1P28360 AL353743.4-201ENST00000422653 1547 ntBASIC7.71□□□□□ -1.18
MSX1P28360 CD46-209ENST00000367047 3089 ntTSL 5 BASIC7.71□□□□□ -1.18
MSX1P28360 CASP12-201ENST00000375726 1306 ntAPPRIS P5 TSL 1 (best) BASIC7.71□□□□□ -1.18
MSX1P28360 STARD5-201ENST00000302824 4871 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
MSX1P28360 CLTC-201ENST00000269122 7760 ntAPPRIS P3 TSL 1 (best) BASIC7.71□□□□□ -1.18
MSX1P28360 ZNF35-202ENST00000396056 2661 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
MSX1P28360 NKAIN2-202ENST00000368417 3115 ntAPPRIS P1 TSL 5 BASIC7.71□□□□□ -1.18
MSX1P28360 PARP9-205ENST00000477522 3128 ntAPPRIS ALT2 TSL 1 (best) BASIC7.71□□□□□ -1.18
MSX1P28360 PHLDB2-207ENST00000477695 5813 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
MSX1P28360 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC7.71□□□□□ -1.18
MSX1P28360 SP110-215ENST00000540870 2032 ntTSL 2 BASIC7.71□□□□□ -1.18
MSX1P28360 GLT8D2-202ENST00000546436 1578 ntAPPRIS P1 TSL 5 BASIC7.71□□□□□ -1.18
MSX1P28360 MAPK10-371ENST00000641952 5209 ntBASIC7.71□□□□□ -1.18
MSX1P28360 ERBB4-205ENST00000436443 12084 ntAPPRIS ALT2 TSL 1 (best) BASIC7.71□□□□□ -1.18
MSX1P28360 AMPH-202ENST00000356264 3418 ntAPPRIS P3 TSL 1 (best) BASIC7.71□□□□□ -1.18
MSX1P28360 IDI2-201ENST00000277517 1359 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
MSX1P28360 LIMK2-201ENST00000331728 3670 ntAPPRIS P4 TSL 1 (best) BASIC7.71□□□□□ -1.18
MSX1P28360 MAATS1-201ENST00000273390 4433 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
MSX1P28360 PPIP5K2-202ENST00000358359 5813 ntAPPRIS ALT2 TSL 1 (best) BASIC7.7□□□□□ -1.18
MSX1P28360 NUP214-202ENST00000411637 7538 ntAPPRIS ALT2 TSL 1 (best) BASIC7.7□□□□□ -1.18
MSX1P28360 TEFM-204ENST00000580840 2109 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
MSX1P28360 GPNMB-201ENST00000258733 2862 ntAPPRIS P3 TSL 1 (best) BASIC7.7□□□□□ -1.18
MSX1P28360 DYNLT1-202ENST00000367088 2891 ntTSL 2 BASIC7.7□□□□□ -1.18
MSX1P28360 PLXDC2-203ENST00000377252 12468 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
MSX1P28360 AC093768.1-201ENST00000505987 2173 ntBASIC7.7□□□□□ -1.18
MSX1P28360 FMN2-206ENST00000543681 2902 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
MSX1P28360 ODF2L-203ENST00000359242 7560 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
MSX1P28360 TMEM144-216ENST00000514558 3699 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
MSX1P28360 ZNF562-208ENST00000590155 1712 ntAPPRIS ALT2 TSL 2 BASIC7.7□□□□□ -1.18
MSX1P28360 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC7.7□□□□□ -1.18
MSX1P28360 AURKA-201ENST00000312783 2223 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
MSX1P28360 HERC2P8-202ENST00000564334 3705 ntBASIC7.7□□□□□ -1.18
MSX1P28360 MAP4K4-219ENST00000625522 7458 ntAPPRIS P5 TSL 5 BASIC7.7□□□□□ -1.18
MSX1P28360 GFPT1-201ENST00000357308 8703 ntTSL 5 BASIC7.7□□□□□ -1.18
MSX1P28360 SPATA31A3-201ENST00000428649 4256 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
MSX1P28360 SPATA31A5-201ENST00000437823 4256 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
MSX1P28360 MEIS1-202ENST00000398506 3530 ntTSL 5 BASIC7.7□□□□□ -1.18
MSX1P28360 OLFML1-201ENST00000329293 2792 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 98.9 ms