Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC008662.1-201ENST00000521805 674 ntTSL 3 BASIC6.29□□□□□ -1.4
COL5A1P20908 CA1-222ENST00000523953 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL5A1P20908 PPWD1-214ENST00000535264 2195 ntTSL 2 BASIC6.29□□□□□ -1.4
COL5A1P20908 AC079950.1-201ENST00000551229 568 ntTSL 4 BASIC6.29□□□□□ -1.4
COL5A1P20908 AL355075.2-201ENST00000555435 478 ntTSL 2 BASIC6.29□□□□□ -1.4
COL5A1P20908 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL5A1P20908 AC104151.1-201ENST00000563764 323 ntAPPRIS P1 TSL 3 BASIC6.29□□□□□ -1.4
COL5A1P20908 ZNF571-205ENST00000590751 1700 ntTSL 2 BASIC6.29□□□□□ -1.4
COL5A1P20908 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC6.29□□□□□ -1.4
COL5A1P20908 AL136295.6-201ENST00000610486 658 ntBASIC6.29□□□□□ -1.4
COL5A1P20908 FO681491.1-202ENST00000623392 737 ntBASIC6.29□□□□□ -1.4
COL5A1P20908 AC021079.1-201ENST00000625268 907 ntTSL 3 BASIC6.29□□□□□ -1.4
COL5A1P20908 LINC01440-210ENST00000629744 541 ntTSL 5 BASIC6.29□□□□□ -1.4
COL5A1P20908 ZNF438-208ENST00000538351 3284 ntAPPRIS ALT2 TSL 2 BASIC6.29□□□□□ -1.4
COL5A1P20908 SLC13A1-204ENST00000539873 2222 ntTSL 5 BASIC6.29□□□□□ -1.4
COL5A1P20908 LINC01968-202ENST00000423318 3647 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL5A1P20908 AP005139.1-201ENST00000580702 1647 ntBASIC6.29□□□□□ -1.4
COL5A1P20908 AC008163.1-201ENST00000636281 1455 ntTSL 5 BASIC6.29□□□□□ -1.4
COL5A1P20908 DEFB132-201ENST00000382376 2121 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL5A1P20908 OR4Q2-201ENST00000541415 2778 ntAPPRIS P5 BASIC6.29□□□□□ -1.4
COL5A1P20908 MEP1B-201ENST00000269202 2312 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL5A1P20908 SCYL3-202ENST00000367771 6364 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL5A1P20908 TEK-201ENST00000380036 4760 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL5A1P20908 IL5RA-209ENST00000446632 2514 ntAPPRIS P4 TSL 5 BASIC6.29□□□□□ -1.4
COL5A1P20908 RTN4-205ENST00000394609 1898 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL5A1P20908 CD300E-201ENST00000392619 3501 ntAPPRIS P2 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL5A1P20908 CCDC150-202ENST00000409270 2243 ntAPPRIS ALT2 TSL 5 BASIC6.29□□□□□ -1.4
COL5A1P20908 DNA2-203ENST00000399180 3207 ntTSL 2 BASIC6.29□□□□□ -1.4
COL5A1P20908 XIAP-202ENST00000371199 8591 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL5A1P20908 MYO5C-201ENST00000261839 6971 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL5A1P20908 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL5A1P20908 AL096800.1-201ENST00000405326 893 ntBASIC6.29□□□□□ -1.4
COL5A1P20908 AL713922.1-201ENST00000416477 747 ntBASIC6.29□□□□□ -1.4
COL5A1P20908 MTND2P12-201ENST00000417560 1252 ntBASIC6.29□□□□□ -1.4
COL5A1P20908 AL035401.1-201ENST00000420572 871 ntTSL 3 BASIC6.29□□□□□ -1.4
COL5A1P20908 MKLN1-204ENST00000429546 572 ntTSL 4 BASIC6.29□□□□□ -1.4
COL5A1P20908 GAPDHP48-201ENST00000436626 961 ntBASIC6.29□□□□□ -1.4
COL5A1P20908 LMCD1-AS1-202ENST00000439407 576 ntTSL 4 BASIC6.29□□□□□ -1.4
COL5A1P20908 AC073109.1-201ENST00000445066 978 ntBASIC6.29□□□□□ -1.4
COL5A1P20908 VPS25P1-201ENST00000455691 508 ntBASIC6.29□□□□□ -1.4
COL5A1P20908 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL5A1P20908 KHDC1P1-201ENST00000511053 508 ntBASIC6.29□□□□□ -1.4
COL5A1P20908 AC013724.1-201ENST00000511962 783 ntTSL 2 BASIC6.29□□□□□ -1.4
COL5A1P20908 FAU-203ENST00000525297 355 ntTSL 5 BASIC6.29□□□□□ -1.4
COL5A1P20908 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
COL5A1P20908 LINC01320-205ENST00000604250 857 ntTSL 5 BASIC6.29□□□□□ -1.4
COL5A1P20908 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC6.29□□□□□ -1.4
COL5A1P20908 LINC01676-209ENST00000623043 896 ntTSL 4 BASIC6.29□□□□□ -1.4
COL5A1P20908 LINC02495-203ENST00000636704 242 ntBASIC6.29□□□□□ -1.4
COL5A1P20908 KCNN3-201ENST00000271915 13033 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL5A1P20908 STT3A-214ENST00000531491 2160 ntTSL 2 BASIC6.29□□□□□ -1.4
COL5A1P20908 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC6.29□□□□□ -1.4
COL5A1P20908 GLRA3-201ENST00000274093 8770 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL5A1P20908 ASB8-201ENST00000317697 2615 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL5A1P20908 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL5A1P20908 SLC9A4-201ENST00000295269 4138 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL5A1P20908 CAST-204ENST00000341926 2487 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL5A1P20908 SLCO1C1-207ENST00000540354 2529 ntTSL 2 BASIC6.28□□□□□ -1.4
COL5A1P20908 AC131649.2-201ENST00000624925 4439 ntBASIC6.28□□□□□ -1.4
COL5A1P20908 SLC26A9-202ENST00000367134 4616 ntTSL 5 BASIC6.28□□□□□ -1.4
COL5A1P20908 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC6.28□□□□□ -1.4
COL5A1P20908 CYP4Z2P-202ENST00000505841 1436 ntTSL 2 BASIC6.28□□□□□ -1.4
COL5A1P20908 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
COL5A1P20908 COX6B1P3-201ENST00000312310 260 ntBASIC6.28□□□□□ -1.4
COL5A1P20908 PRPS1-202ENST00000372419 628 ntTSL 2 BASIC6.28□□□□□ -1.4
COL5A1P20908 LINC01620-202ENST00000372910 649 ntTSL 5 BASIC6.28□□□□□ -1.4
COL5A1P20908 SUGT1P2-201ENST00000379452 992 ntBASIC6.28□□□□□ -1.4
COL5A1P20908 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
COL5A1P20908 SLC20A1P1-201ENST00000413906 956 ntBASIC6.28□□□□□ -1.4
COL5A1P20908 LINC01393-201ENST00000419905 746 ntTSL 2 BASIC6.28□□□□□ -1.4
COL5A1P20908 AL590004.3-202ENST00000445883 451 ntBASIC6.28□□□□□ -1.4
COL5A1P20908 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
COL5A1P20908 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC6.28□□□□□ -1.4
COL5A1P20908 AP002954.1-201ENST00000526274 425 ntTSL 3 BASIC6.28□□□□□ -1.4
COL5A1P20908 MAGOHB-204ENST00000539554 666 ntTSL 3 BASIC6.28□□□□□ -1.4
COL5A1P20908 AC127522.1-201ENST00000560531 751 ntTSL 2 BASIC6.28□□□□□ -1.4
COL5A1P20908 AC011120.1-201ENST00000583916 624 ntTSL 5 BASIC6.28□□□□□ -1.4
COL5A1P20908 AL049840.5-201ENST00000602827 552 ntBASIC6.28□□□□□ -1.4
COL5A1P20908 MIR6085-201ENST00000618314 110 ntBASIC6.28□□□□□ -1.4
COL5A1P20908 BABAM2-201ENST00000342045 1681 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL5A1P20908 BABAM2-203ENST00000361704 1686 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
COL5A1P20908 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
COL5A1P20908 AL136984.1-201ENST00000607611 1893 ntBASIC6.28□□□□□ -1.4
COL5A1P20908 MAPK10-251ENST00000640858 3052 ntTSL 5 BASIC6.28□□□□□ -1.4
COL5A1P20908 WDCP-202ENST00000406895 3700 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL5A1P20908 HIPK1-201ENST00000340480 6997 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
COL5A1P20908 SP110-204ENST00000392048 1937 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
COL5A1P20908 ZHX3-205ENST00000432768 3551 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
COL5A1P20908 MFN1-205ENST00000471841 5224 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL5A1P20908 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL5A1P20908 LINC-ROR-201ENST00000553704 2603 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
COL5A1P20908 GRIP1-201ENST00000359742 5216 ntTSL 5 BASIC6.28□□□□□ -1.4
COL5A1P20908 NFAT5-201ENST00000349945 13362 ntAPPRIS ALT1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL5A1P20908 PHF6-202ENST00000370799 4186 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
COL5A1P20908 TMEM67-205ENST00000453321 4651 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL5A1P20908 LGALS8-204ENST00000352231 1402 ntAPPRIS P4 TSL 2 BASIC6.28□□□□□ -1.4
COL5A1P20908 RIPOR2-206ENST00000538035 5389 ntTSL 2 BASIC6.28□□□□□ -1.4
COL5A1P20908 ANK2-215ENST00000509550 3638 ntTSL 2 BASIC6.28□□□□□ -1.4
COL5A1P20908 STAMBPL1-201ENST00000371922 1899 ntTSL 2 BASIC6.28□□□□□ -1.4
COL5A1P20908 DHRS9-205ENST00000432060 1652 ntTSL 2 BASIC6.28□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 70.7 ms