Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 RMDN2-202ENST00000354545 1381 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
LMO4P61968 LINC02532-207ENST00000436659 1387 ntTSL 2 BASIC5.5□□□□□ -1.53
LMO4P61968 AC123912.3-201ENST00000600907 1367 ntBASIC5.5□□□□□ -1.53
LMO4P61968 GPR151-201ENST00000311104 3088 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
LMO4P61968 OR7D4-202ENST00000641244 4968 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
LMO4P61968 LARS-212ENST00000510191 3737 ntTSL 2 BASIC5.5□□□□□ -1.53
LMO4P61968 QTRT2-212ENST00000485050 3844 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
LMO4P61968 HERC4-211ENST00000492996 3385 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
LMO4P61968 SORBS1-219ENST00000607232 4374 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
LMO4P61968 BRCA1-201ENST00000352993 3668 ntTSL 5 BASIC5.5□□□□□ -1.53
LMO4P61968 AF131216.1-201ENST00000498997 5856 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
LMO4P61968 POLA1-201ENST00000379059 5440 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
LMO4P61968 POLA1-206ENST00000611764 5434 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
LMO4P61968 C11orf72-201ENST00000333139 2431 ntTSL 2 BASIC5.49□□□□□ -1.53
LMO4P61968 NOSTRIN-209ENST00000458381 2535 ntTSL 2 BASIC5.49□□□□□ -1.53
LMO4P61968 PSG6-204ENST00000402603 1412 ntTSL 5 BASIC5.49□□□□□ -1.53
LMO4P61968 BEST1-202ENST00000449131 4267 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
LMO4P61968 RNF146-215ENST00000616343 2077 ntAPPRIS ALT1 TSL 5 BASIC5.49□□□□□ -1.53
LMO4P61968 MTFR1L-207ENST00000466284 3262 ntTSL 2 BASIC5.49□□□□□ -1.53
LMO4P61968 ETV1-201ENST00000242066 6348 ntTSL 5 BASIC5.49□□□□□ -1.53
LMO4P61968 NDC80-201ENST00000261597 2172 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
LMO4P61968 KCNIP4-201ENST00000359001 2168 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
LMO4P61968 UBA2-202ENST00000439527 2802 ntTSL 2 BASIC5.49□□□□□ -1.53
LMO4P61968 TBX15-201ENST00000207157 3492 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
LMO4P61968 NR5A2-206ENST00000544748 4775 ntAPPRIS ALT1 TSL 2 BASIC5.49□□□□□ -1.53
LMO4P61968 SMG1P5-202ENST00000529428 4219 ntBASIC5.49□□□□□ -1.53
LMO4P61968 SMG1P2-201ENST00000566127 4221 ntBASIC5.49□□□□□ -1.53
LMO4P61968 AP005139.1-201ENST00000580702 1647 ntBASIC5.49□□□□□ -1.53
LMO4P61968 RPL7L1-201ENST00000304734 3769 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
LMO4P61968 HMBOX1-211ENST00000524238 1731 ntTSL 2 BASIC5.49□□□□□ -1.53
LMO4P61968 RIF1-201ENST00000243326 15003 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
LMO4P61968 TMEM72-AS1-201ENST00000450287 3300 ntTSL 2 BASIC5.49□□□□□ -1.53
LMO4P61968 NBPF12-203ENST00000611443 5594 ntTSL 5 BASIC5.49□□□□□ -1.53
LMO4P61968 ZNF23-204ENST00000428724 1932 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
LMO4P61968 ARGFX-201ENST00000334384 992 ntAPPRIS P1 TSL 3 BASIC5.49□□□□□ -1.53
LMO4P61968 RNU1-65P-201ENST00000363919 148 ntBASIC5.49□□□□□ -1.53
LMO4P61968 RNA5SP232-201ENST00000364144 119 ntBASIC5.49□□□□□ -1.53
LMO4P61968 MIR1275-201ENST00000408770 80 ntBASIC5.49□□□□□ -1.53
LMO4P61968 LINC01811-201ENST00000415991 594 ntTSL 5 BASIC5.49□□□□□ -1.53
LMO4P61968 AC245452.2-201ENST00000435222 392 ntBASIC5.49□□□□□ -1.53
LMO4P61968 BRWD1-IT1-201ENST00000435608 489 ntTSL 3 BASIC5.49□□□□□ -1.53
LMO4P61968 AL138899.2-201ENST00000439139 499 ntBASIC5.49□□□□□ -1.53
LMO4P61968 AC136489.1-203ENST00000450246 736 ntTSL 5 BASIC5.49□□□□□ -1.53
LMO4P61968 AL392046.1-201ENST00000450742 569 ntTSL 5 BASIC5.49□□□□□ -1.53
LMO4P61968 AC011752.1-201ENST00000451476 494 ntTSL 5 BASIC5.49□□□□□ -1.53
LMO4P61968 AC007099.1-201ENST00000451622 1185 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
LMO4P61968 CTSLP6-201ENST00000458273 1002 ntBASIC5.49□□□□□ -1.53
LMO4P61968 AC104339.1-201ENST00000465478 348 ntBASIC5.49□□□□□ -1.53
LMO4P61968 AC122718.2-201ENST00000505325 591 ntBASIC5.49□□□□□ -1.53
LMO4P61968 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC5.49□□□□□ -1.53
LMO4P61968 CSNK1A1-207ENST00000515768 1098 ntAPPRIS P4 TSL 5 BASIC5.49□□□□□ -1.53
LMO4P61968 LACTB2-AS1-203ENST00000518553 817 ntTSL 5 BASIC5.49□□□□□ -1.53
LMO4P61968 AC022915.3-201ENST00000518620 594 ntTSL 4 BASIC5.49□□□□□ -1.53
LMO4P61968 AC135983.3-201ENST00000528049 1226 ntBASIC5.49□□□□□ -1.53
LMO4P61968 SOX9-AS1-211ENST00000533179 460 ntTSL 3 BASIC5.49□□□□□ -1.53
LMO4P61968 EBF2-204ENST00000535548 1017 ntTSL 2 BASIC5.49□□□□□ -1.53
LMO4P61968 LINC00944-204ENST00000544499 366 ntTSL 5 BASIC5.49□□□□□ -1.53
LMO4P61968 RPL3P13-201ENST00000550415 216 ntBASIC5.49□□□□□ -1.53
LMO4P61968 TMEM106C-215ENST00000550552 776 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
LMO4P61968 AC004232.1-201ENST00000571388 208 ntBASIC5.49□□□□□ -1.53
LMO4P61968 MIR3154-201ENST00000577829 84 ntBASIC5.49□□□□□ -1.53
LMO4P61968 AC135178.4-201ENST00000585275 548 ntTSL 2 BASIC5.49□□□□□ -1.53
LMO4P61968 IGKV2OR2-1-201ENST00000605129 304 ntBASIC5.49□□□□□ -1.53
LMO4P61968 AL353729.2-201ENST00000605859 1249 ntBASIC5.49□□□□□ -1.53
LMO4P61968 BRCC3-209ENST00000620502 882 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
LMO4P61968 AC111152.1-202ENST00000635848 339 ntBASIC5.49□□□□□ -1.53
LMO4P61968 CASC19-212ENST00000641153 1287 ntBASIC5.49□□□□□ -1.53
LMO4P61968 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC5.49□□□□□ -1.53
LMO4P61968 GJA10-203ENST00000638915 1479 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
LMO4P61968 KAT14-201ENST00000377681 3483 ntAPPRIS ALT1 TSL 5 BASIC5.49□□□□□ -1.53
LMO4P61968 NSUN4-208ENST00000498008 3867 ntTSL 2 BASIC5.49□□□□□ -1.53
LMO4P61968 KCNJ16-205ENST00000586462 1897 ntTSL 5 BASIC5.49□□□□□ -1.53
LMO4P61968 EIF3L-203ENST00000412331 3220 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
LMO4P61968 OR2T2-203ENST00000642130 3331 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
LMO4P61968 ZNF699-201ENST00000308650 2094 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
LMO4P61968 AC004672.1-201ENST00000513082 2088 ntTSL 5 BASIC5.49□□□□□ -1.53
LMO4P61968 TRIM49-201ENST00000329758 2163 ntAPPRIS P2 TSL 1 (best) BASIC5.49□□□□□ -1.53
LMO4P61968 TRIM49C-201ENST00000448984 2163 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
LMO4P61968 ZNF181-204ENST00000492450 5086 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
LMO4P61968 MKKS-201ENST00000347364 6714 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
LMO4P61968 BMX-201ENST00000342014 2499 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
LMO4P61968 AC138915.4-201ENST00000565549 4147 ntBASIC5.49□□□□□ -1.53
LMO4P61968 NIN-204ENST00000382043 4216 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
LMO4P61968 PTK2-228ENST00000521059 4405 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
LMO4P61968 MAPK10-280ENST00000641166 2684 ntAPPRIS ALT1 BASIC5.49□□□□□ -1.53
LMO4P61968 ZNF326-203ENST00000370447 9433 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
LMO4P61968 NBPF3-202ENST00000318249 3591 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
LMO4P61968 ZSCAN5A-201ENST00000391713 3562 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
LMO4P61968 OPALIN-204ENST00000419479 3581 ntTSL 2 BASIC5.49□□□□□ -1.53
LMO4P61968 DLC1-215ENST00000520226 3556 ntTSL 2 BASIC5.49□□□□□ -1.53
LMO4P61968 TTTY4B-201ENST00000420149 1346 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
LMO4P61968 TTTY4-201ENST00000436568 1346 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
LMO4P61968 NACA-203ENST00000454682 6629 ntTSL 5 BASIC5.48□□□□□ -1.53
LMO4P61968 TTTY4C-201ENST00000456123 1346 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
LMO4P61968 AC005702.3-201ENST00000585345 1447 ntBASIC5.48□□□□□ -1.53
LMO4P61968 GIF-201ENST00000257248 1518 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
LMO4P61968 DTNA-226ENST00000596745 1508 ntTSL 2 BASIC5.48□□□□□ -1.53
LMO4P61968 MYCBP2-212ENST00000612956 1542 ntTSL 5 BASIC5.48□□□□□ -1.53
LMO4P61968 CLEC9A-201ENST00000355819 1734 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
LMO4P61968 LINC01362-202ENST00000452901 1712 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms