Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 KCNA2-205ENST00000633222 11877 ntAPPRIS P1 TSL 5 BASIC8.12□□□□□ -1.11
COL5A3P25940 LINC00102-201ENST00000445785 1340 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
COL5A3P25940 KCTD6-201ENST00000355076 2425 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
COL5A3P25940 COL12A1-207ENST00000483888 9637 ntAPPRIS ALT1 TSL 5 BASIC8.12□□□□□ -1.11
COL5A3P25940 POTEH-AS1-201ENST00000422014 2566 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
COL5A3P25940 WDR7-202ENST00000357574 7213 ntTSL 5 BASIC8.12□□□□□ -1.11
COL5A3P25940 ZNF841-203ENST00000594295 3819 ntAPPRIS P1 TSL 3 BASIC8.12□□□□□ -1.11
COL5A3P25940 LIMCH1-216ENST00000512820 5071 ntAPPRIS ALT2 TSL 1 (best) BASIC8.12□□□□□ -1.11
COL5A3P25940 IL1B-201ENST00000263341 1631 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
COL5A3P25940 OR1D2-202ENST00000641064 4882 ntAPPRIS P1 BASIC8.12□□□□□ -1.11
COL5A3P25940 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
COL5A3P25940 HEPH-203ENST00000419594 3694 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
COL5A3P25940 TMCC1-202ENST00000426664 5484 ntTSL 5 BASIC8.12□□□□□ -1.11
COL5A3P25940 AC003989.1-201ENST00000434569 565 ntBASIC8.12□□□□□ -1.11
COL5A3P25940 ATP5LP2-201ENST00000440646 311 ntBASIC8.12□□□□□ -1.11
COL5A3P25940 LAMTOR5-AS1-201ENST00000444238 881 ntTSL 5 BASIC8.12□□□□□ -1.11
COL5A3P25940 AC011476.1-201ENST00000466725 307 ntBASIC8.12□□□□□ -1.11
COL5A3P25940 RN7SL273P-201ENST00000481561 299 ntBASIC8.12□□□□□ -1.11
COL5A3P25940 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
COL5A3P25940 LINC02270-202ENST00000515691 541 ntTSL 3 BASIC8.12□□□□□ -1.11
COL5A3P25940 CASC21-201ENST00000521586 290 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
COL5A3P25940 AC027544.3-201ENST00000535082 757 ntBASIC8.12□□□□□ -1.11
COL5A3P25940 AP000763.3-201ENST00000542598 334 ntTSL 5 BASIC8.12□□□□□ -1.11
COL5A3P25940 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC8.12□□□□□ -1.11
COL5A3P25940 AC092121.1-201ENST00000569452 202 ntBASIC8.12□□□□□ -1.11
COL5A3P25940 AC104836.2-201ENST00000609675 1293 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
COL5A3P25940 AL512624.1-201ENST00000613638 469 ntBASIC8.12□□□□□ -1.11
COL5A3P25940 PSMD10P2-203ENST00000627340 914 ntTSL 5 BASIC8.12□□□□□ -1.11
COL5A3P25940 PIEZO2-210ENST00000580640 8334 ntAPPRIS ALT2 TSL 5 BASIC8.12□□□□□ -1.11
COL5A3P25940 SMG7-202ENST00000367537 5970 ntAPPRIS ALT2 TSL 5 BASIC8.11□□□□□ -1.11
COL5A3P25940 AC023818.2-201ENST00000623817 2304 ntBASIC8.11□□□□□ -1.11
COL5A3P25940 CHN1-204ENST00000409597 1445 ntTSL 3 BASIC8.11□□□□□ -1.11
COL5A3P25940 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC8.11□□□□□ -1.11
COL5A3P25940 CU633906.1-201ENST00000621924 2380 ntTSL 3 BASIC8.11□□□□□ -1.11
COL5A3P25940 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC8.11□□□□□ -1.11
COL5A3P25940 RTN3-202ENST00000339997 4886 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
COL5A3P25940 HERC3-202ENST00000402738 4974 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
COL5A3P25940 TSC22D1-212ENST00000611198 2877 ntTSL 2 BASIC8.11□□□□□ -1.11
COL5A3P25940 EFTUD2-220ENST00000591382 3675 ntAPPRIS P1 TSL 2 BASIC8.11□□□□□ -1.11
COL5A3P25940 SYNE1-206ENST00000367253 5189 ntTSL 5 BASIC8.11□□□□□ -1.11
COL5A3P25940 SLFN13-209ENST00000533791 4121 ntAPPRIS P1 TSL 2 BASIC8.11□□□□□ -1.11
COL5A3P25940 CASC18-202ENST00000548557 2503 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
COL5A3P25940 BTBD3-202ENST00000378226 4904 ntAPPRIS P4 TSL 1 (best) BASIC8.11□□□□□ -1.11
COL5A3P25940 MAPK10-298ENST00000641297 3040 ntAPPRIS P2 BASIC8.11□□□□□ -1.11
COL5A3P25940 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC8.11□□□□□ -1.11
COL5A3P25940 SNORD16-201ENST00000362803 99 ntBASIC8.11□□□□□ -1.11
COL5A3P25940 U3.25-201ENST00000391209 220 ntBASIC8.11□□□□□ -1.11
COL5A3P25940 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC8.11□□□□□ -1.11
COL5A3P25940 RN7SKP286-201ENST00000410894 299 ntBASIC8.11□□□□□ -1.11
COL5A3P25940 RPS7P14-201ENST00000426405 583 ntBASIC8.11□□□□□ -1.11
COL5A3P25940 NPM1P19-201ENST00000450070 712 ntBASIC8.11□□□□□ -1.11
COL5A3P25940 AL158068.1-201ENST00000506116 616 ntBASIC8.11□□□□□ -1.11
COL5A3P25940 OR5H7P-201ENST00000514084 930 ntBASIC8.11□□□□□ -1.11
COL5A3P25940 MAGOHB-204ENST00000539554 666 ntTSL 3 BASIC8.11□□□□□ -1.11
COL5A3P25940 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC8.11□□□□□ -1.11
COL5A3P25940 AC090236.2-201ENST00000587933 1101 ntBASIC8.11□□□□□ -1.11
COL5A3P25940 AC005332.4-201ENST00000592752 579 ntBASIC8.11□□□□□ -1.11
COL5A3P25940 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC8.11□□□□□ -1.11
COL5A3P25940 AP001823.1-201ENST00000604056 1003 ntBASIC8.11□□□□□ -1.11
COL5A3P25940 AL513218.1-201ENST00000606527 391 ntBASIC8.11□□□□□ -1.11
COL5A3P25940 AC022467.1-201ENST00000614738 749 ntBASIC8.11□□□□□ -1.11
COL5A3P25940 AC126175.1-201ENST00000617041 758 ntBASIC8.11□□□□□ -1.11
COL5A3P25940 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC8.11□□□□□ -1.11
COL5A3P25940 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC8.11□□□□□ -1.11
COL5A3P25940 SLMAP-203ENST00000383718 6749 ntTSL 2 BASIC8.11□□□□□ -1.11
COL5A3P25940 EXOC4-201ENST00000253861 4185 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
COL5A3P25940 PIGN-225ENST00000638435 4382 ntTSL 5 BASIC8.11□□□□□ -1.11
COL5A3P25940 CYP2G2P-201ENST00000594920 1485 ntBASIC8.11□□□□□ -1.11
COL5A3P25940 ADAM22-205ENST00000398209 9144 ntAPPRIS P4 TSL 1 (best) BASIC8.11□□□□□ -1.11
COL5A3P25940 AL450423.1-201ENST00000615176 1857 ntTSL 2 BASIC8.11□□□□□ -1.11
COL5A3P25940 SH3GLB1-203ENST00000535010 6227 ntTSL 2 BASIC8.11□□□□□ -1.11
COL5A3P25940 SMG1-210ENST00000565224 2372 ntTSL 5 BASIC8.11□□□□□ -1.11
COL5A3P25940 WDPCP-204ENST00000409199 2466 ntTSL 2 BASIC8.11□□□□□ -1.11
COL5A3P25940 CADM1-203ENST00000452722 8588 ntAPPRIS P3 TSL 1 (best) BASIC8.11□□□□□ -1.11
COL5A3P25940 USPL1-203ENST00000614860 4074 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
COL5A3P25940 PCSK1-201ENST00000311106 5086 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
COL5A3P25940 RAP1GDS1-204ENST00000408900 1942 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
COL5A3P25940 CASC19-238ENST00000641523 1558 ntBASIC8.1□□□□□ -1.11
COL5A3P25940 RPS7P8-201ENST00000418311 581 ntBASIC8.1□□□□□ -1.11
COL5A3P25940 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC8.1□□□□□ -1.11
COL5A3P25940 AC074035.1-201ENST00000420725 1184 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
COL5A3P25940 AC023141.3-201ENST00000436698 278 ntBASIC8.1□□□□□ -1.11
COL5A3P25940 CASC6-201ENST00000437768 733 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
COL5A3P25940 DSCAM-IT1-201ENST00000440363 720 ntTSL 3 BASIC8.1□□□□□ -1.11
COL5A3P25940 AL583839.2-201ENST00000443716 641 ntTSL 3 BASIC8.1□□□□□ -1.11
COL5A3P25940 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC8.1□□□□□ -1.11
COL5A3P25940 RN7SL834P-201ENST00000461450 286 ntBASIC8.1□□□□□ -1.11
COL5A3P25940 RN7SL714P-201ENST00000487050 298 ntBASIC8.1□□□□□ -1.11
COL5A3P25940 AC027309.1-201ENST00000519976 528 ntTSL 4 BASIC8.1□□□□□ -1.11
COL5A3P25940 AC022973.3-201ENST00000521014 467 ntTSL 5 BASIC8.1□□□□□ -1.11
COL5A3P25940 AC073941.1-201ENST00000559148 539 ntTSL 4 BASIC8.1□□□□□ -1.11
COL5A3P25940 AC025171.4-201ENST00000607250 1047 ntBASIC8.1□□□□□ -1.11
COL5A3P25940 AL139220.2-221ENST00000628123 395 ntTSL 5 BASIC8.1□□□□□ -1.11
COL5A3P25940 GOLGB1-209ENST00000614479 11115 ntAPPRIS ALT2 TSL 1 (best) BASIC8.1□□□□□ -1.11
COL5A3P25940 FBXL13-201ENST00000313221 2744 ntTSL 2 BASIC8.1□□□□□ -1.11
COL5A3P25940 TRHDE-201ENST00000261180 10733 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
COL5A3P25940 NOVA1-204ENST00000465357 3573 ntAPPRIS ALT1 TSL 3 BASIC8.1□□□□□ -1.11
COL5A3P25940 PSD3-203ENST00000428502 6330 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
COL5A3P25940 OR7E122P-202ENST00000641144 6171 ntBASIC8.1□□□□□ -1.11
COL5A3P25940 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC8.1□□□□□ -1.11
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms