Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 KRTAP2-5P-201ENST00000446109 396 ntBASIC8.15□□□□□ -1.11
COL5A3P25940 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC8.15□□□□□ -1.11
COL5A3P25940 KBTBD8-202ENST00000460576 984 ntTSL 2 BASIC8.15□□□□□ -1.11
COL5A3P25940 AC117395.1-201ENST00000487390 403 ntBASIC8.15□□□□□ -1.11
COL5A3P25940 RN7SL193P-201ENST00000491708 276 ntBASIC8.15□□□□□ -1.11
COL5A3P25940 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC8.15□□□□□ -1.11
COL5A3P25940 AC079793.1-201ENST00000553076 713 ntTSL 4 BASIC8.15□□□□□ -1.11
COL5A3P25940 AL162464.1-201ENST00000557642 554 ntTSL 5 BASIC8.15□□□□□ -1.11
COL5A3P25940 AP005230.1-204ENST00000579097 779 ntTSL 2 BASIC8.15□□□□□ -1.11
COL5A3P25940 LY86-AS1-206ENST00000607278 677 ntTSL 3 BASIC8.15□□□□□ -1.11
COL5A3P25940 RFPL4AP6-201ENST00000616792 846 ntBASIC8.15□□□□□ -1.11
COL5A3P25940 PRDM10-207ENST00000528746 6182 ntTSL 5 BASIC8.15□□□□□ -1.11
COL5A3P25940 WDR19-207ENST00000506503 2513 ntTSL 2 BASIC8.14□□□□□ -1.11
COL5A3P25940 DLG2-202ENST00000330014 2789 ntTSL 2 BASIC8.14□□□□□ -1.11
COL5A3P25940 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
COL5A3P25940 AC009237.3-203ENST00000442128 3551 ntBASIC8.14□□□□□ -1.11
COL5A3P25940 ZNF317-201ENST00000247956 4073 ntAPPRIS P3 TSL 1 (best) BASIC8.14□□□□□ -1.11
COL5A3P25940 BTBD3-214ENST00000618296 4582 ntAPPRIS ALT1 TSL 1 (best) BASIC8.14□□□□□ -1.11
COL5A3P25940 ARHGAP42P2-201ENST00000416089 2140 ntBASIC8.14□□□□□ -1.11
COL5A3P25940 SLC26A5-205ENST00000393723 2174 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
COL5A3P25940 PPWD1-214ENST00000535264 2195 ntTSL 2 BASIC8.14□□□□□ -1.11
COL5A3P25940 UMAD1-206ENST00000636849 2157 ntAPPRIS P1 TSL 5 BASIC8.14□□□□□ -1.11
COL5A3P25940 SCN11A-201ENST00000302328 6500 ntAPPRIS P2 TSL 5 BASIC8.14□□□□□ -1.11
COL5A3P25940 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
COL5A3P25940 UTY-203ENST00000362096 4990 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
COL5A3P25940 CKAP2L-201ENST00000302450 4533 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
COL5A3P25940 CTNNA2-209ENST00000466387 4349 ntAPPRIS P1 TSL 2 BASIC8.14□□□□□ -1.11
COL5A3P25940 AP004147.1-201ENST00000505153 6314 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
COL5A3P25940 MT4-201ENST00000219162 294 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
COL5A3P25940 OR2L2-201ENST00000366479 1134 ntAPPRIS P1 BASIC8.14□□□□□ -1.11
COL5A3P25940 AC017035.1-201ENST00000411999 1115 ntBASIC8.14□□□□□ -1.11
COL5A3P25940 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC8.14□□□□□ -1.11
COL5A3P25940 AC005077.1-201ENST00000449226 375 ntBASIC8.14□□□□□ -1.11
COL5A3P25940 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC8.14□□□□□ -1.11
COL5A3P25940 MTATP6P1-201ENST00000514057 681 ntBASIC8.14□□□□□ -1.11
COL5A3P25940 SCARNA18.1-201ENST00000516330 83 ntBASIC8.14□□□□□ -1.11
COL5A3P25940 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC8.14□□□□□ -1.11
COL5A3P25940 AP001858.2-201ENST00000536213 601 ntBASIC8.14□□□□□ -1.11
COL5A3P25940 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
COL5A3P25940 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC8.14□□□□□ -1.11
COL5A3P25940 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC8.14□□□□□ -1.11
COL5A3P25940 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC8.14□□□□□ -1.11
COL5A3P25940 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC8.14□□□□□ -1.11
COL5A3P25940 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC8.14□□□□□ -1.11
COL5A3P25940 UBXN10-201ENST00000375099 5571 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
COL5A3P25940 RNPC3-208ENST00000533099 3641 ntAPPRIS P2 TSL 5 BASIC8.14□□□□□ -1.11
COL5A3P25940 ZNF569-202ENST00000392149 3689 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
COL5A3P25940 DOCK8-209ENST00000469391 6386 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
COL5A3P25940 GPR107-202ENST00000372406 7353 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
COL5A3P25940 ZNF217-201ENST00000302342 5633 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
COL5A3P25940 TMCO1-208ENST00000612311 4468 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
COL5A3P25940 OPHN1-201ENST00000355520 7879 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
COL5A3P25940 ALPK1-201ENST00000177648 4537 ntAPPRIS P3 TSL 1 (best) BASIC8.13□□□□□ -1.11
COL5A3P25940 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC8.13□□□□□ -1.11
COL5A3P25940 USP48-203ENST00000374732 3037 ntTSL 2 BASIC8.13□□□□□ -1.11
COL5A3P25940 BTK-209ENST00000618050 2417 ntTSL 5 BASIC8.13□□□□□ -1.11
COL5A3P25940 AMOT-202ENST00000371958 2462 ntAPPRIS ALT2 TSL 5 BASIC8.13□□□□□ -1.11
COL5A3P25940 AP003486.1-201ENST00000525716 3994 ntBASIC8.13□□□□□ -1.11
COL5A3P25940 DIDO1-206ENST00000395340 7551 ntAPPRIS P3 TSL 1 (best) BASIC8.13□□□□□ -1.11
COL5A3P25940 MID1-204ENST00000380782 3352 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
COL5A3P25940 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC8.13□□□□□ -1.11
COL5A3P25940 AC023283.1-201ENST00000453491 4897 ntTSL 3 BASIC8.13□□□□□ -1.11
COL5A3P25940 LRP2BP-203ENST00000510776 3055 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
COL5A3P25940 RN7SKP81-201ENST00000365603 331 ntBASIC8.13□□□□□ -1.11
COL5A3P25940 U3.43-201ENST00000410734 213 ntBASIC8.13□□□□□ -1.11
COL5A3P25940 RPL7AP14-201ENST00000424041 802 ntBASIC8.13□□□□□ -1.11
COL5A3P25940 AC130360.1-201ENST00000425489 1117 ntBASIC8.13□□□□□ -1.11
COL5A3P25940 AL355390.2-201ENST00000446691 880 ntTSL 5 BASIC8.13□□□□□ -1.11
COL5A3P25940 AC098847.1-201ENST00000473094 348 ntBASIC8.13□□□□□ -1.11
COL5A3P25940 RNA5SP362-201ENST00000516048 118 ntBASIC8.13□□□□□ -1.11
COL5A3P25940 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC8.13□□□□□ -1.11
COL5A3P25940 AC130365.2-201ENST00000525882 1201 ntBASIC8.13□□□□□ -1.11
COL5A3P25940 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC8.13□□□□□ -1.11
COL5A3P25940 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC8.13□□□□□ -1.11
COL5A3P25940 LINC01533-204ENST00000590719 435 ntTSL 5 BASIC8.13□□□□□ -1.11
COL5A3P25940 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC8.13□□□□□ -1.11
COL5A3P25940 CHD3-202ENST00000358181 7286 ntAPPRIS ALT2 TSL 1 (best) BASIC8.13□□□□□ -1.11
COL5A3P25940 HTR2A-203ENST00000543956 4689 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
COL5A3P25940 NEK2P2-201ENST00000438441 1338 ntBASIC8.13□□□□□ -1.11
COL5A3P25940 LINC01968-202ENST00000423318 3647 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
COL5A3P25940 AL590065.1-201ENST00000603371 4774 ntBASIC8.13□□□□□ -1.11
COL5A3P25940 AC244100.2-202ENST00000612584 3878 ntTSL 1 (best) BASIC8.13□□□□□ -1.11
COL5A3P25940 MELK-207ENST00000536860 2342 ntTSL 2 BASIC8.13□□□□□ -1.11
COL5A3P25940 ACP6-205ENST00000583509 6923 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
COL5A3P25940 UNC5D-206ENST00000453357 7002 ntAPPRIS ALT2 TSL 1 (best) BASIC8.13□□□□□ -1.11
COL5A3P25940 ZNF699-201ENST00000308650 2094 ntAPPRIS P1 TSL 1 (best) BASIC8.13□□□□□ -1.11
COL5A3P25940 TRMT10A-202ENST00000394876 1638 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
COL5A3P25940 AL359694.2-201ENST00000567753 1615 ntBASIC8.12□□□□□ -1.11
COL5A3P25940 MAPK10-377ENST00000642006 2752 ntBASIC8.12□□□□□ -1.11
COL5A3P25940 CLCC1-203ENST00000356970 4803 ntAPPRIS ALT2 TSL 5 BASIC8.12□□□□□ -1.11
COL5A3P25940 LINC01114-201ENST00000421071 482 ntTSL 3 BASIC8.12□□□□□ -1.11
COL5A3P25940 NFIA-AS2-202ENST00000421455 768 ntTSL 4 BASIC8.12□□□□□ -1.11
COL5A3P25940 AL645936.1-201ENST00000441979 518 ntBASIC8.12□□□□□ -1.11
COL5A3P25940 RPL31P15-201ENST00000449770 338 ntBASIC8.12□□□□□ -1.11
COL5A3P25940 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
COL5A3P25940 IGHV3-57-201ENST00000520143 280 ntBASIC8.12□□□□□ -1.11
COL5A3P25940 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC8.12□□□□□ -1.11
COL5A3P25940 5S_rRNA.28-201ENST00000638107 119 ntBASIC8.12□□□□□ -1.11
COL5A3P25940 AL513283.1-203ENST00000640010 891 ntTSL 5 BASIC8.12□□□□□ -1.11
COL5A3P25940 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC8.12□□□□□ -1.11
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms