Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP3Q9Y6I4 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
USP3Q9Y6I4 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
USP3Q9Y6I4 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
USP3Q9Y6I4 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP3Q9Y6I4 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.85■□□□□ 0.93
USP3Q9Y6I4 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP3Q9Y6I4 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP3Q9Y6I4 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC20.85■□□□□ 0.93
USP3Q9Y6I4 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP3Q9Y6I4 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP3Q9Y6I4 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
USP3Q9Y6I4 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC20.85■□□□□ 0.93
USP3Q9Y6I4 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC20.85■□□□□ 0.93
USP3Q9Y6I4 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC20.85■□□□□ 0.93
USP3Q9Y6I4 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC20.85■□□□□ 0.93
USP3Q9Y6I4 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
USP3Q9Y6I4 AC124016.1-201ENST00000609552 612 ntBASIC20.85■□□□□ 0.93
USP3Q9Y6I4 AL023875.1-201ENST00000640777 796 ntBASIC20.85■□□□□ 0.93
USP3Q9Y6I4 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP3Q9Y6I4 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP3Q9Y6I4 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
USP3Q9Y6I4 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.85■□□□□ 0.93
USP3Q9Y6I4 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC20.85■□□□□ 0.93
USP3Q9Y6I4 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
USP3Q9Y6I4 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
USP3Q9Y6I4 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC20.85■□□□□ 0.93
USP3Q9Y6I4 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC20.85■□□□□ 0.93
USP3Q9Y6I4 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
USP3Q9Y6I4 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
USP3Q9Y6I4 AL391422.3-201ENST00000603791 2761 ntBASIC20.84■□□□□ 0.93
USP3Q9Y6I4 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP3Q9Y6I4 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP3Q9Y6I4 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
USP3Q9Y6I4 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
USP3Q9Y6I4 TREX2-204ENST00000370212 861 ntTSL 5 BASIC20.84■□□□□ 0.93
USP3Q9Y6I4 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
USP3Q9Y6I4 CALM3-202ENST00000391918 702 ntTSL 2 BASIC20.84■□□□□ 0.93
USP3Q9Y6I4 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
USP3Q9Y6I4 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC20.84■□□□□ 0.93
USP3Q9Y6I4 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.84■□□□□ 0.93
USP3Q9Y6I4 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.84■□□□□ 0.93
USP3Q9Y6I4 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC20.84■□□□□ 0.93
USP3Q9Y6I4 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC20.84■□□□□ 0.93
USP3Q9Y6I4 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP3Q9Y6I4 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
USP3Q9Y6I4 STK25-204ENST00000405585 1643 ntTSL 2 BASIC20.84■□□□□ 0.93
USP3Q9Y6I4 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP3Q9Y6I4 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP3Q9Y6I4 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP3Q9Y6I4 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
USP3Q9Y6I4 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP3Q9Y6I4 AC116351.2-201ENST00000606540 1585 ntBASIC20.84■□□□□ 0.93
USP3Q9Y6I4 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP3Q9Y6I4 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP3Q9Y6I4 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
USP3Q9Y6I4 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
USP3Q9Y6I4 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
USP3Q9Y6I4 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
USP3Q9Y6I4 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
USP3Q9Y6I4 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
USP3Q9Y6I4 AL158047.1-201ENST00000445918 881 ntBASIC20.83■□□□□ 0.93
USP3Q9Y6I4 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC20.83■□□□□ 0.93
USP3Q9Y6I4 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC20.83■□□□□ 0.93
USP3Q9Y6I4 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC20.83■□□□□ 0.93
USP3Q9Y6I4 Six3os1_6.1-201ENST00000620790 196 ntBASIC20.83■□□□□ 0.93
USP3Q9Y6I4 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.83■□□□□ 0.92
USP3Q9Y6I4 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
USP3Q9Y6I4 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
USP3Q9Y6I4 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
USP3Q9Y6I4 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
USP3Q9Y6I4 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
USP3Q9Y6I4 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP3Q9Y6I4 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
USP3Q9Y6I4 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP3Q9Y6I4 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP3Q9Y6I4 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.82■□□□□ 0.92
USP3Q9Y6I4 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
USP3Q9Y6I4 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
USP3Q9Y6I4 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.82■□□□□ 0.92
USP3Q9Y6I4 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
USP3Q9Y6I4 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP3Q9Y6I4 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC20.82■□□□□ 0.92
USP3Q9Y6I4 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC20.82■□□□□ 0.92
USP3Q9Y6I4 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC20.82■□□□□ 0.92
USP3Q9Y6I4 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC20.82■□□□□ 0.92
USP3Q9Y6I4 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
USP3Q9Y6I4 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
USP3Q9Y6I4 PRKY-204ENST00000533551 1019 ntBASIC20.82■□□□□ 0.92
USP3Q9Y6I4 PNN-205ENST00000556530 601 ntTSL 2 BASIC20.82■□□□□ 0.92
USP3Q9Y6I4 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC20.82■□□□□ 0.92
USP3Q9Y6I4 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP3Q9Y6I4 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP3Q9Y6I4 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
USP3Q9Y6I4 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC20.82■□□□□ 0.92
USP3Q9Y6I4 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.82■□□□□ 0.92
USP3Q9Y6I4 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
USP3Q9Y6I4 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
USP3Q9Y6I4 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
USP3Q9Y6I4 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms