Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 MAX-217ENST00000557277 728 ntTSL 3 BASIC21.3■■□□□ 1
SNX9Q9Y5X1 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC21.3■■□□□ 1
SNX9Q9Y5X1 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
SNX9Q9Y5X1 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
SNX9Q9Y5X1 AL121906.2-201ENST00000621597 723 ntBASIC21.3■■□□□ 1
SNX9Q9Y5X1 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SNX9Q9Y5X1 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC21.3■■□□□ 1
SNX9Q9Y5X1 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SNX9Q9Y5X1 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
SNX9Q9Y5X1 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
SNX9Q9Y5X1 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC21.29■■□□□ 1
SNX9Q9Y5X1 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC21.29■■□□□ 1
SNX9Q9Y5X1 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC21.29■■□□□ 1
SNX9Q9Y5X1 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC21.29■■□□□ 1
SNX9Q9Y5X1 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SNX9Q9Y5X1 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC21.29■■□□□ 1
SNX9Q9Y5X1 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.29■■□□□ 1
SNX9Q9Y5X1 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC21.29■■□□□ 1
SNX9Q9Y5X1 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SNX9Q9Y5X1 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC21.29■■□□□ 1
SNX9Q9Y5X1 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
SNX9Q9Y5X1 ISG20-202ENST00000379224 540 ntTSL 3 BASIC21.29■■□□□ 1
SNX9Q9Y5X1 CALM3-202ENST00000391918 702 ntTSL 2 BASIC21.29■■□□□ 1
SNX9Q9Y5X1 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC21.29■■□□□ 1
SNX9Q9Y5X1 LY6E-205ENST00000519611 635 ntTSL 3 BASIC21.29■■□□□ 1
SNX9Q9Y5X1 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC21.29■■□□□ 1
SNX9Q9Y5X1 PRKY-204ENST00000533551 1019 ntBASIC21.29■■□□□ 1
SNX9Q9Y5X1 PNN-205ENST00000556530 601 ntTSL 2 BASIC21.29■■□□□ 1
SNX9Q9Y5X1 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC21.29■■□□□ 1
SNX9Q9Y5X1 FAM197Y4-202ENST00000622692 608 ntBASIC21.29■■□□□ 1
SNX9Q9Y5X1 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
SNX9Q9Y5X1 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC21.29■■□□□ 1
SNX9Q9Y5X1 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC21.29■■□□□ 1
SNX9Q9Y5X1 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC21.29■■□□□ 1
SNX9Q9Y5X1 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC21.29■■□□□ 1
SNX9Q9Y5X1 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC21.29■■□□□ 1
SNX9Q9Y5X1 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
SNX9Q9Y5X1 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC21.29■■□□□ 1
SNX9Q9Y5X1 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC21.28■■□□□ 1
SNX9Q9Y5X1 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
SNX9Q9Y5X1 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SNX9Q9Y5X1 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
SNX9Q9Y5X1 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC21.28■■□□□ 1
SNX9Q9Y5X1 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SNX9Q9Y5X1 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC21.28■■□□□ 1
SNX9Q9Y5X1 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SNX9Q9Y5X1 AC239809.2-201ENST00000415381 517 ntBASIC21.28■■□□□ 1
SNX9Q9Y5X1 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC21.28■■□□□ 1
SNX9Q9Y5X1 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
SNX9Q9Y5X1 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC21.28■■□□□ 1
SNX9Q9Y5X1 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC21.28■■□□□ 1
SNX9Q9Y5X1 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC21.28■■□□□ 1
SNX9Q9Y5X1 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC21.28■■□□□ 1
SNX9Q9Y5X1 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC21.28■■□□□ 1
SNX9Q9Y5X1 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC21.28■■□□□ 1
SNX9Q9Y5X1 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC21.28■■□□□ 1
SNX9Q9Y5X1 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
SNX9Q9Y5X1 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SNX9Q9Y5X1 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC21.27■■□□□ 1
SNX9Q9Y5X1 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
SNX9Q9Y5X1 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC21.27■■□□□ 1
SNX9Q9Y5X1 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC21.27■■□□□ 1
SNX9Q9Y5X1 STK25-204ENST00000405585 1643 ntTSL 2 BASIC21.27■■□□□ 1
SNX9Q9Y5X1 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC21.27■■□□□ 1
SNX9Q9Y5X1 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC21.27■■□□□ 1
SNX9Q9Y5X1 SERF2-207ENST00000409614 582 ntTSL 2 BASIC21.27■■□□□ 1
SNX9Q9Y5X1 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC21.27■■□□□ 1
SNX9Q9Y5X1 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC21.27■■□□□ 1
SNX9Q9Y5X1 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC21.27■■□□□ 1
SNX9Q9Y5X1 AC124016.1-201ENST00000609552 612 ntBASIC21.27■■□□□ 1
SNX9Q9Y5X1 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC21.27■■□□□ 1
SNX9Q9Y5X1 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC21.27■■□□□ 1
SNX9Q9Y5X1 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.27■■□□□ 1
SNX9Q9Y5X1 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC21.27■■□□□ 1
SNX9Q9Y5X1 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SNX9Q9Y5X1 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SNX9Q9Y5X1 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC21.27■■□□□ 1
SNX9Q9Y5X1 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
SNX9Q9Y5X1 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC21.26■□□□□ 0.99
SNX9Q9Y5X1 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SNX9Q9Y5X1 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
SNX9Q9Y5X1 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SNX9Q9Y5X1 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC21.26■□□□□ 0.99
SNX9Q9Y5X1 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SNX9Q9Y5X1 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
SNX9Q9Y5X1 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SNX9Q9Y5X1 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
SNX9Q9Y5X1 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC21.26■□□□□ 0.99
SNX9Q9Y5X1 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SNX9Q9Y5X1 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SNX9Q9Y5X1 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SNX9Q9Y5X1 KRASP1-201ENST00000407852 552 ntBASIC21.26■□□□□ 0.99
SNX9Q9Y5X1 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC21.26■□□□□ 0.99
SNX9Q9Y5X1 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC21.26■□□□□ 0.99
SNX9Q9Y5X1 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SNX9Q9Y5X1 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC21.26■□□□□ 0.99
SNX9Q9Y5X1 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC21.26■□□□□ 0.99
SNX9Q9Y5X1 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC21.26■□□□□ 0.99
SNX9Q9Y5X1 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
SNX9Q9Y5X1 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms