Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC22.26■■□□□ 1.15
COL4A3BPQ9Y5P4 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
COL4A3BPQ9Y5P4 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
COL4A3BPQ9Y5P4 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
COL4A3BPQ9Y5P4 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
COL4A3BPQ9Y5P4 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
COL4A3BPQ9Y5P4 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC22.26■■□□□ 1.15
COL4A3BPQ9Y5P4 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
COL4A3BPQ9Y5P4 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
COL4A3BPQ9Y5P4 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
COL4A3BPQ9Y5P4 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC22.25■■□□□ 1.15
COL4A3BPQ9Y5P4 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
COL4A3BPQ9Y5P4 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC22.25■■□□□ 1.15
COL4A3BPQ9Y5P4 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
COL4A3BPQ9Y5P4 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
COL4A3BPQ9Y5P4 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC22.25■■□□□ 1.15
COL4A3BPQ9Y5P4 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
COL4A3BPQ9Y5P4 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
COL4A3BPQ9Y5P4 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
COL4A3BPQ9Y5P4 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
COL4A3BPQ9Y5P4 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC22.25■■□□□ 1.15
COL4A3BPQ9Y5P4 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC22.25■■□□□ 1.15
COL4A3BPQ9Y5P4 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC22.25■■□□□ 1.15
COL4A3BPQ9Y5P4 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
COL4A3BPQ9Y5P4 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
COL4A3BPQ9Y5P4 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC22.25■■□□□ 1.15
COL4A3BPQ9Y5P4 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC22.25■■□□□ 1.15
COL4A3BPQ9Y5P4 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC22.25■■□□□ 1.15
COL4A3BPQ9Y5P4 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
COL4A3BPQ9Y5P4 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC22.25■■□□□ 1.15
COL4A3BPQ9Y5P4 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC22.25■■□□□ 1.15
COL4A3BPQ9Y5P4 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
COL4A3BPQ9Y5P4 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
COL4A3BPQ9Y5P4 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
COL4A3BPQ9Y5P4 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
COL4A3BPQ9Y5P4 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC22.25■■□□□ 1.15
COL4A3BPQ9Y5P4 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
COL4A3BPQ9Y5P4 AC112907.3-201ENST00000577781 2400 ntBASIC22.25■■□□□ 1.15
COL4A3BPQ9Y5P4 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL4A3BPQ9Y5P4 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
COL4A3BPQ9Y5P4 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC22.24■■□□□ 1.15
COL4A3BPQ9Y5P4 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
COL4A3BPQ9Y5P4 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
COL4A3BPQ9Y5P4 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL4A3BPQ9Y5P4 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC22.24■■□□□ 1.15
COL4A3BPQ9Y5P4 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL4A3BPQ9Y5P4 AL158047.1-201ENST00000445918 881 ntBASIC22.24■■□□□ 1.15
COL4A3BPQ9Y5P4 ABHD17AP6-201ENST00000458502 1044 ntBASIC22.24■■□□□ 1.15
COL4A3BPQ9Y5P4 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC22.24■■□□□ 1.15
COL4A3BPQ9Y5P4 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
COL4A3BPQ9Y5P4 AC023632.3-201ENST00000521633 145 ntBASIC22.24■■□□□ 1.15
COL4A3BPQ9Y5P4 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
COL4A3BPQ9Y5P4 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC22.24■■□□□ 1.15
COL4A3BPQ9Y5P4 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC22.24■■□□□ 1.15
COL4A3BPQ9Y5P4 AL031963.3-201ENST00000606441 850 ntBASIC22.24■■□□□ 1.15
COL4A3BPQ9Y5P4 AC120498.8-201ENST00000614275 531 ntBASIC22.24■■□□□ 1.15
COL4A3BPQ9Y5P4 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC22.24■■□□□ 1.15
COL4A3BPQ9Y5P4 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL4A3BPQ9Y5P4 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC22.24■■□□□ 1.15
COL4A3BPQ9Y5P4 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL4A3BPQ9Y5P4 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL4A3BPQ9Y5P4 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL4A3BPQ9Y5P4 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC22.24■■□□□ 1.15
COL4A3BPQ9Y5P4 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL4A3BPQ9Y5P4 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL4A3BPQ9Y5P4 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC22.24■■□□□ 1.15
COL4A3BPQ9Y5P4 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
COL4A3BPQ9Y5P4 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC22.23■■□□□ 1.15
COL4A3BPQ9Y5P4 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
COL4A3BPQ9Y5P4 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
COL4A3BPQ9Y5P4 KRT8P17-201ENST00000453110 1448 ntBASIC22.23■■□□□ 1.15
COL4A3BPQ9Y5P4 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
COL4A3BPQ9Y5P4 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
COL4A3BPQ9Y5P4 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC22.23■■□□□ 1.15
COL4A3BPQ9Y5P4 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC22.23■■□□□ 1.15
COL4A3BPQ9Y5P4 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
COL4A3BPQ9Y5P4 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
COL4A3BPQ9Y5P4 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC22.23■■□□□ 1.15
COL4A3BPQ9Y5P4 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
COL4A3BPQ9Y5P4 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC22.23■■□□□ 1.15
COL4A3BPQ9Y5P4 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC22.23■■□□□ 1.15
COL4A3BPQ9Y5P4 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC22.23■■□□□ 1.15
COL4A3BPQ9Y5P4 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC22.23■■□□□ 1.15
COL4A3BPQ9Y5P4 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
COL4A3BPQ9Y5P4 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
COL4A3BPQ9Y5P4 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC22.23■■□□□ 1.15
COL4A3BPQ9Y5P4 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
COL4A3BPQ9Y5P4 KRT8P20-201ENST00000423953 1409 ntBASIC22.23■■□□□ 1.15
COL4A3BPQ9Y5P4 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC22.22■■□□□ 1.15
COL4A3BPQ9Y5P4 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
COL4A3BPQ9Y5P4 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC22.22■■□□□ 1.15
COL4A3BPQ9Y5P4 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC22.22■■□□□ 1.15
COL4A3BPQ9Y5P4 PCDHAC2-203ENST00000615316 3011 ntBASIC22.22■■□□□ 1.15
COL4A3BPQ9Y5P4 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
COL4A3BPQ9Y5P4 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC22.22■■□□□ 1.15
COL4A3BPQ9Y5P4 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
COL4A3BPQ9Y5P4 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
COL4A3BPQ9Y5P4 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC22.22■■□□□ 1.15
COL4A3BPQ9Y5P4 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
COL4A3BPQ9Y5P4 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms