Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
RHBDD3Q9Y3P4 AC004911.1-201ENST00000416316 871 ntBASIC17.39■□□□□ 0.37
RHBDD3Q9Y3P4 CYP2T1P-201ENST00000432607 1285 ntBASIC17.39■□□□□ 0.37
RHBDD3Q9Y3P4 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RHBDD3Q9Y3P4 MAZ-216ENST00000616501 991 ntTSL 5 BASIC17.39■□□□□ 0.37
RHBDD3Q9Y3P4 MDK-213ENST00000617138 635 ntTSL 2 BASIC17.39■□□□□ 0.37
RHBDD3Q9Y3P4 PARP1-210ENST00000629232 477 ntTSL 5 BASIC17.39■□□□□ 0.37
RHBDD3Q9Y3P4 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC17.39■□□□□ 0.37
RHBDD3Q9Y3P4 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.39■□□□□ 0.37
RHBDD3Q9Y3P4 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.37
RHBDD3Q9Y3P4 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
RHBDD3Q9Y3P4 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RHBDD3Q9Y3P4 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RHBDD3Q9Y3P4 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
RHBDD3Q9Y3P4 DPP3P2-201ENST00000416030 1696 ntBASIC17.39■□□□□ 0.37
RHBDD3Q9Y3P4 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
RHBDD3Q9Y3P4 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RHBDD3Q9Y3P4 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
RHBDD3Q9Y3P4 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
RHBDD3Q9Y3P4 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RHBDD3Q9Y3P4 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC17.38■□□□□ 0.37
RHBDD3Q9Y3P4 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC17.38■□□□□ 0.37
RHBDD3Q9Y3P4 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RHBDD3Q9Y3P4 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RHBDD3Q9Y3P4 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RHBDD3Q9Y3P4 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RHBDD3Q9Y3P4 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC17.38■□□□□ 0.37
RHBDD3Q9Y3P4 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC17.38■□□□□ 0.37
RHBDD3Q9Y3P4 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC17.38■□□□□ 0.37
RHBDD3Q9Y3P4 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RHBDD3Q9Y3P4 BET1L-204ENST00000410108 637 ntTSL 3 BASIC17.38■□□□□ 0.37
RHBDD3Q9Y3P4 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC17.38■□□□□ 0.37
RHBDD3Q9Y3P4 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC17.38■□□□□ 0.37
RHBDD3Q9Y3P4 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RHBDD3Q9Y3P4 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC17.38■□□□□ 0.37
RHBDD3Q9Y3P4 STK25-205ENST00000405883 1904 ntTSL 2 BASIC17.38■□□□□ 0.37
RHBDD3Q9Y3P4 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC17.38■□□□□ 0.37
RHBDD3Q9Y3P4 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
RHBDD3Q9Y3P4 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RHBDD3Q9Y3P4 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
RHBDD3Q9Y3P4 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RHBDD3Q9Y3P4 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
RHBDD3Q9Y3P4 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 BX119927.1-201ENST00000636596 1552 ntBASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 MCRIP2P1-201ENST00000394346 511 ntBASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 METTL26-203ENST00000397664 604 ntTSL 2 BASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 APTR-203ENST00000430801 583 ntTSL 5 BASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 GLI3-203ENST00000437480 451 ntTSL 2 BASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 AC069236.1-201ENST00000604339 616 ntBASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 AC100791.3-201ENST00000617619 330 ntBASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 AC008694.1-202ENST00000636953 945 ntBASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RHBDD3Q9Y3P4 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
RHBDD3Q9Y3P4 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RHBDD3Q9Y3P4 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
RHBDD3Q9Y3P4 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC17.36■□□□□ 0.37
RHBDD3Q9Y3P4 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
RHBDD3Q9Y3P4 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RHBDD3Q9Y3P4 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
RHBDD3Q9Y3P4 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC17.36■□□□□ 0.37
RHBDD3Q9Y3P4 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
RHBDD3Q9Y3P4 BX323043.1-201ENST00000641006 1765 ntBASIC17.36■□□□□ 0.37
RHBDD3Q9Y3P4 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RHBDD3Q9Y3P4 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
RHBDD3Q9Y3P4 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
RHBDD3Q9Y3P4 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RHBDD3Q9Y3P4 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
RHBDD3Q9Y3P4 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RHBDD3Q9Y3P4 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms