Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
HIF3AQ9Y2N7 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HIF3AQ9Y2N7 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
HIF3AQ9Y2N7 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HIF3AQ9Y2N7 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HIF3AQ9Y2N7 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HIF3AQ9Y2N7 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
HIF3AQ9Y2N7 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
HIF3AQ9Y2N7 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HIF3AQ9Y2N7 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HIF3AQ9Y2N7 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HIF3AQ9Y2N7 HLA-G-202ENST00000376815 851 ntBASIC17.94■□□□□ 0.46
HIF3AQ9Y2N7 HLA-G-203ENST00000376818 1127 ntBASIC17.94■□□□□ 0.46
HIF3AQ9Y2N7 AC004911.1-201ENST00000416316 871 ntBASIC17.94■□□□□ 0.46
HIF3AQ9Y2N7 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HIF3AQ9Y2N7 AC093787.1-201ENST00000450396 207 ntBASIC17.94■□□□□ 0.46
HIF3AQ9Y2N7 C2orf69P4-201ENST00000565394 541 ntBASIC17.94■□□□□ 0.46
HIF3AQ9Y2N7 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC17.94■□□□□ 0.46
HIF3AQ9Y2N7 AC133552.2-202ENST00000575694 574 ntBASIC17.94■□□□□ 0.46
HIF3AQ9Y2N7 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
HIF3AQ9Y2N7 AC092437.1-201ENST00000624794 1048 ntBASIC17.94■□□□□ 0.46
HIF3AQ9Y2N7 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
HIF3AQ9Y2N7 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HIF3AQ9Y2N7 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HIF3AQ9Y2N7 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HIF3AQ9Y2N7 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HIF3AQ9Y2N7 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC17.94■□□□□ 0.46
HIF3AQ9Y2N7 AL158211.5-201ENST00000623583 2518 ntBASIC17.94■□□□□ 0.46
HIF3AQ9Y2N7 KRT17P1-201ENST00000399211 1546 ntBASIC17.93■□□□□ 0.46
HIF3AQ9Y2N7 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC17.93■□□□□ 0.46
HIF3AQ9Y2N7 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC17.93■□□□□ 0.46
HIF3AQ9Y2N7 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HIF3AQ9Y2N7 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC17.93■□□□□ 0.46
HIF3AQ9Y2N7 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
HIF3AQ9Y2N7 AC007952.6-201ENST00000573168 2673 ntBASIC17.93■□□□□ 0.46
HIF3AQ9Y2N7 AC003957.1-201ENST00000625108 2673 ntBASIC17.93■□□□□ 0.46
HIF3AQ9Y2N7 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
HIF3AQ9Y2N7 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
HIF3AQ9Y2N7 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
HIF3AQ9Y2N7 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC17.93■□□□□ 0.46
HIF3AQ9Y2N7 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC17.93■□□□□ 0.46
HIF3AQ9Y2N7 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HIF3AQ9Y2N7 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC17.93■□□□□ 0.46
HIF3AQ9Y2N7 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC17.93■□□□□ 0.46
HIF3AQ9Y2N7 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HIF3AQ9Y2N7 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC17.93■□□□□ 0.46
HIF3AQ9Y2N7 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC17.93■□□□□ 0.46
HIF3AQ9Y2N7 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
HIF3AQ9Y2N7 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HIF3AQ9Y2N7 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC17.93■□□□□ 0.46
HIF3AQ9Y2N7 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
HIF3AQ9Y2N7 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HIF3AQ9Y2N7 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HIF3AQ9Y2N7 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
HIF3AQ9Y2N7 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC17.92■□□□□ 0.46
HIF3AQ9Y2N7 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HIF3AQ9Y2N7 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
HIF3AQ9Y2N7 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HIF3AQ9Y2N7 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HIF3AQ9Y2N7 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC17.92■□□□□ 0.46
HIF3AQ9Y2N7 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
HIF3AQ9Y2N7 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HIF3AQ9Y2N7 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HIF3AQ9Y2N7 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HIF3AQ9Y2N7 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC17.92■□□□□ 0.46
HIF3AQ9Y2N7 HES2-205ENST00000487437 968 ntTSL 3 BASIC17.92■□□□□ 0.46
HIF3AQ9Y2N7 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HIF3AQ9Y2N7 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC17.92■□□□□ 0.46
HIF3AQ9Y2N7 AC023632.3-201ENST00000521633 145 ntBASIC17.92■□□□□ 0.46
HIF3AQ9Y2N7 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
HIF3AQ9Y2N7 AC080038.1-201ENST00000611274 1154 ntBASIC17.92■□□□□ 0.46
HIF3AQ9Y2N7 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC17.92■□□□□ 0.46
HIF3AQ9Y2N7 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HIF3AQ9Y2N7 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC17.92■□□□□ 0.46
HIF3AQ9Y2N7 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HIF3AQ9Y2N7 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HIF3AQ9Y2N7 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC17.92■□□□□ 0.46
HIF3AQ9Y2N7 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC17.92■□□□□ 0.46
HIF3AQ9Y2N7 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HIF3AQ9Y2N7 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HIF3AQ9Y2N7 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
HIF3AQ9Y2N7 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HIF3AQ9Y2N7 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC17.91■□□□□ 0.46
HIF3AQ9Y2N7 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HIF3AQ9Y2N7 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HIF3AQ9Y2N7 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC17.91■□□□□ 0.46
HIF3AQ9Y2N7 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC17.91■□□□□ 0.46
HIF3AQ9Y2N7 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HIF3AQ9Y2N7 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC17.91■□□□□ 0.46
HIF3AQ9Y2N7 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HIF3AQ9Y2N7 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HIF3AQ9Y2N7 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC17.91■□□□□ 0.46
HIF3AQ9Y2N7 ISCU-212ENST00000547005 795 ntTSL 3 BASIC17.91■□□□□ 0.46
HIF3AQ9Y2N7 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
HIF3AQ9Y2N7 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC17.91■□□□□ 0.46
HIF3AQ9Y2N7 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HIF3AQ9Y2N7 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC17.91■□□□□ 0.46
HIF3AQ9Y2N7 AC073111.5-205ENST00000641717 521 ntBASIC17.91■□□□□ 0.46
HIF3AQ9Y2N7 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
HIF3AQ9Y2N7 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms