Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS9D1Q9Y2B5 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.78■□□□□ 0.76
VPS9D1Q9Y2B5 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS9D1Q9Y2B5 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS9D1Q9Y2B5 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VPS9D1Q9Y2B5 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
VPS9D1Q9Y2B5 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19.77■□□□□ 0.76
VPS9D1Q9Y2B5 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.77■□□□□ 0.76
VPS9D1Q9Y2B5 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS9D1Q9Y2B5 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS9D1Q9Y2B5 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS9D1Q9Y2B5 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
VPS9D1Q9Y2B5 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VPS9D1Q9Y2B5 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
VPS9D1Q9Y2B5 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC19.77■□□□□ 0.76
VPS9D1Q9Y2B5 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC19.77■□□□□ 0.76
VPS9D1Q9Y2B5 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
VPS9D1Q9Y2B5 CRK-204ENST00000574295 1391 ntTSL 5 BASIC19.77■□□□□ 0.76
VPS9D1Q9Y2B5 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VPS9D1Q9Y2B5 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.77■□□□□ 0.76
VPS9D1Q9Y2B5 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.77■□□□□ 0.75
VPS9D1Q9Y2B5 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.75
VPS9D1Q9Y2B5 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
VPS9D1Q9Y2B5 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC19.76■□□□□ 0.75
VPS9D1Q9Y2B5 STK25-204ENST00000405585 1643 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS9D1Q9Y2B5 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS9D1Q9Y2B5 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS9D1Q9Y2B5 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS9D1Q9Y2B5 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS9D1Q9Y2B5 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS9D1Q9Y2B5 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS9D1Q9Y2B5 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC19.76■□□□□ 0.75
VPS9D1Q9Y2B5 AL390719.1-204ENST00000412397 1219 ntBASIC19.76■□□□□ 0.75
VPS9D1Q9Y2B5 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS9D1Q9Y2B5 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
VPS9D1Q9Y2B5 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC19.76■□□□□ 0.75
VPS9D1Q9Y2B5 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
VPS9D1Q9Y2B5 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS9D1Q9Y2B5 MIR4758-201ENST00000577688 71 ntBASIC19.76■□□□□ 0.75
VPS9D1Q9Y2B5 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS9D1Q9Y2B5 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.76■□□□□ 0.75
VPS9D1Q9Y2B5 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS9D1Q9Y2B5 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS9D1Q9Y2B5 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS9D1Q9Y2B5 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS9D1Q9Y2B5 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS9D1Q9Y2B5 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS9D1Q9Y2B5 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS9D1Q9Y2B5 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS9D1Q9Y2B5 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS9D1Q9Y2B5 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS9D1Q9Y2B5 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VPS9D1Q9Y2B5 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC19.75■□□□□ 0.75
VPS9D1Q9Y2B5 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VPS9D1Q9Y2B5 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
VPS9D1Q9Y2B5 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC19.75■□□□□ 0.75
VPS9D1Q9Y2B5 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC19.75■□□□□ 0.75
VPS9D1Q9Y2B5 TSPY6P-201ENST00000448518 926 ntBASIC19.75■□□□□ 0.75
VPS9D1Q9Y2B5 NME6-213ENST00000451657 871 ntTSL 2 BASIC19.75■□□□□ 0.75
VPS9D1Q9Y2B5 PFKL-212ENST00000628044 129 ntTSL 3 BASIC19.75■□□□□ 0.75
VPS9D1Q9Y2B5 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
VPS9D1Q9Y2B5 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.75■□□□□ 0.75
VPS9D1Q9Y2B5 MOK-233ENST00000524214 1539 ntTSL 2 BASIC19.75■□□□□ 0.75
VPS9D1Q9Y2B5 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC19.75■□□□□ 0.75
VPS9D1Q9Y2B5 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
VPS9D1Q9Y2B5 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
VPS9D1Q9Y2B5 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
VPS9D1Q9Y2B5 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS9D1Q9Y2B5 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS9D1Q9Y2B5 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.74■□□□□ 0.75
VPS9D1Q9Y2B5 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
VPS9D1Q9Y2B5 PHGDH-210ENST00000641115 1638 ntBASIC19.74■□□□□ 0.75
VPS9D1Q9Y2B5 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS9D1Q9Y2B5 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC19.74■□□□□ 0.75
VPS9D1Q9Y2B5 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC19.74■□□□□ 0.75
VPS9D1Q9Y2B5 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS9D1Q9Y2B5 DUSP5P2-201ENST00000426873 1033 ntBASIC19.74■□□□□ 0.75
VPS9D1Q9Y2B5 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC19.74■□□□□ 0.75
VPS9D1Q9Y2B5 AC073210.2-201ENST00000430369 194 ntBASIC19.74■□□□□ 0.75
VPS9D1Q9Y2B5 SERP1-205ENST00000487153 657 ntTSL 4 BASIC19.74■□□□□ 0.75
VPS9D1Q9Y2B5 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
VPS9D1Q9Y2B5 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS9D1Q9Y2B5 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS9D1Q9Y2B5 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS9D1Q9Y2B5 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
VPS9D1Q9Y2B5 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS9D1Q9Y2B5 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS9D1Q9Y2B5 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS9D1Q9Y2B5 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VPS9D1Q9Y2B5 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS9D1Q9Y2B5 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS9D1Q9Y2B5 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VPS9D1Q9Y2B5 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VPS9D1Q9Y2B5 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC19.73■□□□□ 0.75
VPS9D1Q9Y2B5 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC19.73■□□□□ 0.75
VPS9D1Q9Y2B5 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC19.73■□□□□ 0.75
VPS9D1Q9Y2B5 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC19.73■□□□□ 0.75
VPS9D1Q9Y2B5 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.73■□□□□ 0.75
VPS9D1Q9Y2B5 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS9D1Q9Y2B5 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms