Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC20.65■□□□□ 0.9
AP4E1Q9UPM8 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
AP4E1Q9UPM8 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
AP4E1Q9UPM8 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
AP4E1Q9UPM8 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC20.65■□□□□ 0.9
AP4E1Q9UPM8 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
AP4E1Q9UPM8 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
AP4E1Q9UPM8 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
AP4E1Q9UPM8 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
AP4E1Q9UPM8 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
AP4E1Q9UPM8 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
AP4E1Q9UPM8 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.65■□□□□ 0.9
AP4E1Q9UPM8 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.65■□□□□ 0.9
AP4E1Q9UPM8 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC20.65■□□□□ 0.9
AP4E1Q9UPM8 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
AP4E1Q9UPM8 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC20.64■□□□□ 0.9
AP4E1Q9UPM8 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
AP4E1Q9UPM8 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
AP4E1Q9UPM8 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
AP4E1Q9UPM8 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.64■□□□□ 0.89
AP4E1Q9UPM8 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
AP4E1Q9UPM8 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
AP4E1Q9UPM8 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC20.64■□□□□ 0.89
AP4E1Q9UPM8 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC20.64■□□□□ 0.89
AP4E1Q9UPM8 AC060766.5-201ENST00000590539 871 ntBASIC20.64■□□□□ 0.89
AP4E1Q9UPM8 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
AP4E1Q9UPM8 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC20.64■□□□□ 0.89
AP4E1Q9UPM8 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
AP4E1Q9UPM8 TMEM179-206ENST00000616017 1645 ntBASIC20.64■□□□□ 0.89
AP4E1Q9UPM8 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
AP4E1Q9UPM8 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
AP4E1Q9UPM8 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
AP4E1Q9UPM8 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
AP4E1Q9UPM8 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
AP4E1Q9UPM8 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.63■□□□□ 0.89
AP4E1Q9UPM8 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
AP4E1Q9UPM8 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
AP4E1Q9UPM8 RER1-204ENST00000378518 522 ntTSL 3 BASIC20.63■□□□□ 0.89
AP4E1Q9UPM8 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
AP4E1Q9UPM8 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC20.63■□□□□ 0.89
AP4E1Q9UPM8 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
AP4E1Q9UPM8 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC20.63■□□□□ 0.89
AP4E1Q9UPM8 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC20.63■□□□□ 0.89
AP4E1Q9UPM8 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC20.63■□□□□ 0.89
AP4E1Q9UPM8 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
AP4E1Q9UPM8 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.63■□□□□ 0.89
AP4E1Q9UPM8 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.62■□□□□ 0.89
AP4E1Q9UPM8 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.62■□□□□ 0.89
AP4E1Q9UPM8 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
AP4E1Q9UPM8 APTR-205ENST00000447009 902 ntTSL 2 BASIC20.62■□□□□ 0.89
AP4E1Q9UPM8 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.62■□□□□ 0.89
AP4E1Q9UPM8 PNMA6B-201ENST00000538162 1200 ntBASIC20.62■□□□□ 0.89
AP4E1Q9UPM8 EMC9-206ENST00000560403 872 ntTSL 2 BASIC20.62■□□□□ 0.89
AP4E1Q9UPM8 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC20.62■□□□□ 0.89
AP4E1Q9UPM8 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20.62■□□□□ 0.89
AP4E1Q9UPM8 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC20.62■□□□□ 0.89
AP4E1Q9UPM8 AC006557.6-201ENST00000623071 864 ntBASIC20.62■□□□□ 0.89
AP4E1Q9UPM8 PHGDH-210ENST00000641115 1638 ntBASIC20.62■□□□□ 0.89
AP4E1Q9UPM8 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
AP4E1Q9UPM8 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
AP4E1Q9UPM8 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC20.62■□□□□ 0.89
AP4E1Q9UPM8 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC20.62■□□□□ 0.89
AP4E1Q9UPM8 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC20.62■□□□□ 0.89
AP4E1Q9UPM8 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.61■□□□□ 0.89
AP4E1Q9UPM8 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.61■□□□□ 0.89
AP4E1Q9UPM8 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC20.61■□□□□ 0.89
AP4E1Q9UPM8 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
AP4E1Q9UPM8 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
AP4E1Q9UPM8 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
AP4E1Q9UPM8 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
AP4E1Q9UPM8 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
AP4E1Q9UPM8 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC20.61■□□□□ 0.89
AP4E1Q9UPM8 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC20.61■□□□□ 0.89
AP4E1Q9UPM8 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC20.61■□□□□ 0.89
AP4E1Q9UPM8 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
AP4E1Q9UPM8 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC20.61■□□□□ 0.89
AP4E1Q9UPM8 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC20.61■□□□□ 0.89
AP4E1Q9UPM8 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC20.61■□□□□ 0.89
AP4E1Q9UPM8 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.61■□□□□ 0.89
AP4E1Q9UPM8 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
AP4E1Q9UPM8 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.61■□□□□ 0.89
AP4E1Q9UPM8 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
AP4E1Q9UPM8 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
AP4E1Q9UPM8 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
AP4E1Q9UPM8 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
AP4E1Q9UPM8 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
AP4E1Q9UPM8 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC20.6■□□□□ 0.89
AP4E1Q9UPM8 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
AP4E1Q9UPM8 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC20.6■□□□□ 0.89
AP4E1Q9UPM8 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC20.6■□□□□ 0.89
AP4E1Q9UPM8 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
AP4E1Q9UPM8 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.6■□□□□ 0.89
AP4E1Q9UPM8 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
AP4E1Q9UPM8 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
AP4E1Q9UPM8 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
AP4E1Q9UPM8 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
AP4E1Q9UPM8 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
AP4E1Q9UPM8 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC20.6■□□□□ 0.89
AP4E1Q9UPM8 REXO2-208ENST00000539754 791 ntTSL 2 BASIC20.6■□□□□ 0.89
AP4E1Q9UPM8 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms