Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM39Q9HCM9 PRORSD1P-201ENST00000295112 541 ntBASIC19.71■□□□□ 0.75
TRIM39Q9HCM9 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM39Q9HCM9 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC19.71■□□□□ 0.75
TRIM39Q9HCM9 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC19.71■□□□□ 0.75
TRIM39Q9HCM9 MAX-217ENST00000557277 728 ntTSL 3 BASIC19.71■□□□□ 0.75
TRIM39Q9HCM9 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC19.71■□□□□ 0.75
TRIM39Q9HCM9 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
TRIM39Q9HCM9 AC069544.1-201ENST00000609399 999 ntBASIC19.71■□□□□ 0.75
TRIM39Q9HCM9 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM39Q9HCM9 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM39Q9HCM9 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM39Q9HCM9 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM39Q9HCM9 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM39Q9HCM9 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC19.71■□□□□ 0.75
TRIM39Q9HCM9 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM39Q9HCM9 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
TRIM39Q9HCM9 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
TRIM39Q9HCM9 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM39Q9HCM9 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM39Q9HCM9 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM39Q9HCM9 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.7■□□□□ 0.74
TRIM39Q9HCM9 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM39Q9HCM9 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM39Q9HCM9 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.7■□□□□ 0.74
TRIM39Q9HCM9 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.7■□□□□ 0.74
TRIM39Q9HCM9 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
TRIM39Q9HCM9 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
TRIM39Q9HCM9 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC19.7■□□□□ 0.74
TRIM39Q9HCM9 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
TRIM39Q9HCM9 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM39Q9HCM9 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM39Q9HCM9 THEM4-205ENST00000489410 643 ntTSL 2 BASIC19.7■□□□□ 0.74
TRIM39Q9HCM9 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC19.7■□□□□ 0.74
TRIM39Q9HCM9 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM39Q9HCM9 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM39Q9HCM9 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM39Q9HCM9 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.7■□□□□ 0.74
TRIM39Q9HCM9 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM39Q9HCM9 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM39Q9HCM9 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRIM39Q9HCM9 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19.69■□□□□ 0.74
TRIM39Q9HCM9 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.69■□□□□ 0.74
TRIM39Q9HCM9 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM39Q9HCM9 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM39Q9HCM9 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM39Q9HCM9 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.69■□□□□ 0.74
TRIM39Q9HCM9 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
TRIM39Q9HCM9 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC19.69■□□□□ 0.74
TRIM39Q9HCM9 AC233263.1-201ENST00000578059 224 ntBASIC19.69■□□□□ 0.74
TRIM39Q9HCM9 RN7SL471P-201ENST00000580476 299 ntBASIC19.69■□□□□ 0.74
TRIM39Q9HCM9 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
TRIM39Q9HCM9 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM39Q9HCM9 AL512408.1-201ENST00000569378 2000 ntBASIC19.69■□□□□ 0.74
TRIM39Q9HCM9 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM39Q9HCM9 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM39Q9HCM9 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM39Q9HCM9 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
TRIM39Q9HCM9 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM39Q9HCM9 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM39Q9HCM9 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM39Q9HCM9 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM39Q9HCM9 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRIM39Q9HCM9 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.68■□□□□ 0.74
TRIM39Q9HCM9 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM39Q9HCM9 AL162377.1-201ENST00000618844 1793 ntBASIC19.68■□□□□ 0.74
TRIM39Q9HCM9 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.68■□□□□ 0.74
TRIM39Q9HCM9 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
TRIM39Q9HCM9 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
TRIM39Q9HCM9 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM39Q9HCM9 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM39Q9HCM9 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC19.68■□□□□ 0.74
TRIM39Q9HCM9 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
TRIM39Q9HCM9 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC19.68■□□□□ 0.74
TRIM39Q9HCM9 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC19.68■□□□□ 0.74
TRIM39Q9HCM9 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM39Q9HCM9 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC19.68■□□□□ 0.74
TRIM39Q9HCM9 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM39Q9HCM9 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC19.68■□□□□ 0.74
TRIM39Q9HCM9 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM39Q9HCM9 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC19.68■□□□□ 0.74
TRIM39Q9HCM9 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC19.68■□□□□ 0.74
TRIM39Q9HCM9 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
TRIM39Q9HCM9 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
TRIM39Q9HCM9 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRIM39Q9HCM9 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC19.68■□□□□ 0.74
TRIM39Q9HCM9 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM39Q9HCM9 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM39Q9HCM9 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.67■□□□□ 0.74
TRIM39Q9HCM9 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM39Q9HCM9 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.67■□□□□ 0.74
TRIM39Q9HCM9 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM39Q9HCM9 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
TRIM39Q9HCM9 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC19.67■□□□□ 0.74
TRIM39Q9HCM9 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM39Q9HCM9 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC19.67■□□□□ 0.74
TRIM39Q9HCM9 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TRIM39Q9HCM9 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC19.67■□□□□ 0.74
TRIM39Q9HCM9 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC19.67■□□□□ 0.74
TRIM39Q9HCM9 AL121829.2-201ENST00000620908 328 ntBASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms