Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.19■□□□□ 0.82
LRRC40Q9H9A6 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
LRRC40Q9H9A6 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LRRC40Q9H9A6 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LRRC40Q9H9A6 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LRRC40Q9H9A6 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LRRC40Q9H9A6 AC083906.2-201ENST00000511578 360 ntBASIC20.19■□□□□ 0.82
LRRC40Q9H9A6 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
LRRC40Q9H9A6 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC20.19■□□□□ 0.82
LRRC40Q9H9A6 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LRRC40Q9H9A6 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
LRRC40Q9H9A6 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LRRC40Q9H9A6 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
LRRC40Q9H9A6 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
LRRC40Q9H9A6 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LRRC40Q9H9A6 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.19■□□□□ 0.82
LRRC40Q9H9A6 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.19■□□□□ 0.82
LRRC40Q9H9A6 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LRRC40Q9H9A6 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LRRC40Q9H9A6 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.18■□□□□ 0.82
LRRC40Q9H9A6 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LRRC40Q9H9A6 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LRRC40Q9H9A6 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LRRC40Q9H9A6 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LRRC40Q9H9A6 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LRRC40Q9H9A6 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LRRC40Q9H9A6 AC009237.14-201ENST00000609975 1594 ntBASIC20.18■□□□□ 0.82
LRRC40Q9H9A6 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LRRC40Q9H9A6 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC20.18■□□□□ 0.82
LRRC40Q9H9A6 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LRRC40Q9H9A6 GPX1P1-201ENST00000388829 606 ntBASIC20.18■□□□□ 0.82
LRRC40Q9H9A6 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC20.18■□□□□ 0.82
LRRC40Q9H9A6 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC20.18■□□□□ 0.82
LRRC40Q9H9A6 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
LRRC40Q9H9A6 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC20.18■□□□□ 0.82
LRRC40Q9H9A6 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LRRC40Q9H9A6 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LRRC40Q9H9A6 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
LRRC40Q9H9A6 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC20.18■□□□□ 0.82
LRRC40Q9H9A6 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LRRC40Q9H9A6 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LRRC40Q9H9A6 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LRRC40Q9H9A6 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LRRC40Q9H9A6 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.17■□□□□ 0.82
LRRC40Q9H9A6 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LRRC40Q9H9A6 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LRRC40Q9H9A6 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LRRC40Q9H9A6 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC20.17■□□□□ 0.82
LRRC40Q9H9A6 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
LRRC40Q9H9A6 MIPEPP3-201ENST00000412105 444 ntBASIC20.17■□□□□ 0.82
LRRC40Q9H9A6 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC20.17■□□□□ 0.82
LRRC40Q9H9A6 PPP1R14BP3-201ENST00000509033 445 ntBASIC20.17■□□□□ 0.82
LRRC40Q9H9A6 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LRRC40Q9H9A6 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LRRC40Q9H9A6 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
LRRC40Q9H9A6 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
LRRC40Q9H9A6 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
LRRC40Q9H9A6 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.16■□□□□ 0.82
LRRC40Q9H9A6 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LRRC40Q9H9A6 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LRRC40Q9H9A6 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC20.16■□□□□ 0.82
LRRC40Q9H9A6 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC20.16■□□□□ 0.82
LRRC40Q9H9A6 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC20.16■□□□□ 0.82
LRRC40Q9H9A6 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC20.16■□□□□ 0.82
LRRC40Q9H9A6 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC20.16■□□□□ 0.82
LRRC40Q9H9A6 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC20.16■□□□□ 0.82
LRRC40Q9H9A6 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LRRC40Q9H9A6 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LRRC40Q9H9A6 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LRRC40Q9H9A6 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LRRC40Q9H9A6 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LRRC40Q9H9A6 AC007952.6-201ENST00000573168 2673 ntBASIC20.16■□□□□ 0.82
LRRC40Q9H9A6 AC003957.1-201ENST00000625108 2673 ntBASIC20.16■□□□□ 0.82
LRRC40Q9H9A6 STK25-204ENST00000405585 1643 ntTSL 2 BASIC20.16■□□□□ 0.82
LRRC40Q9H9A6 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LRRC40Q9H9A6 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LRRC40Q9H9A6 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.16■□□□□ 0.82
LRRC40Q9H9A6 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LRRC40Q9H9A6 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
LRRC40Q9H9A6 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.15■□□□□ 0.82
LRRC40Q9H9A6 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.15■□□□□ 0.82
LRRC40Q9H9A6 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
LRRC40Q9H9A6 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
LRRC40Q9H9A6 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
LRRC40Q9H9A6 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.15■□□□□ 0.82
LRRC40Q9H9A6 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC20.15■□□□□ 0.82
LRRC40Q9H9A6 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LRRC40Q9H9A6 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
LRRC40Q9H9A6 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC20.15■□□□□ 0.82
LRRC40Q9H9A6 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
LRRC40Q9H9A6 MOK-233ENST00000524214 1539 ntTSL 2 BASIC20.15■□□□□ 0.82
LRRC40Q9H9A6 AP001271.2-201ENST00000624018 1556 ntBASIC20.15■□□□□ 0.82
LRRC40Q9H9A6 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LRRC40Q9H9A6 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
LRRC40Q9H9A6 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
LRRC40Q9H9A6 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
LRRC40Q9H9A6 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LRRC40Q9H9A6 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC20.15■□□□□ 0.82
LRRC40Q9H9A6 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
LRRC40Q9H9A6 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms