Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PCIF1Q9H4Z3 AC124283.5-201ENST00000624661 1809 ntBASIC21.78■■□□□ 1.08
PCIF1Q9H4Z3 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC21.78■■□□□ 1.08
PCIF1Q9H4Z3 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC21.78■■□□□ 1.08
PCIF1Q9H4Z3 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC21.78■■□□□ 1.08
PCIF1Q9H4Z3 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PCIF1Q9H4Z3 MOK-225ENST00000522867 1883 ntTSL 5 BASIC21.78■■□□□ 1.08
PCIF1Q9H4Z3 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
PCIF1Q9H4Z3 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PCIF1Q9H4Z3 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PCIF1Q9H4Z3 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC21.78■■□□□ 1.08
PCIF1Q9H4Z3 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC21.78■■□□□ 1.08
PCIF1Q9H4Z3 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC21.78■■□□□ 1.08
PCIF1Q9H4Z3 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC21.78■■□□□ 1.08
PCIF1Q9H4Z3 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC21.78■■□□□ 1.08
PCIF1Q9H4Z3 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC21.78■■□□□ 1.08
PCIF1Q9H4Z3 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC21.78■■□□□ 1.08
PCIF1Q9H4Z3 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
PCIF1Q9H4Z3 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PCIF1Q9H4Z3 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC21.78■■□□□ 1.08
PCIF1Q9H4Z3 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
PCIF1Q9H4Z3 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC21.78■■□□□ 1.08
PCIF1Q9H4Z3 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PCIF1Q9H4Z3 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
PCIF1Q9H4Z3 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PCIF1Q9H4Z3 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC21.77■■□□□ 1.08
PCIF1Q9H4Z3 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC21.77■■□□□ 1.08
PCIF1Q9H4Z3 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
PCIF1Q9H4Z3 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
PCIF1Q9H4Z3 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
PCIF1Q9H4Z3 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC21.77■■□□□ 1.08
PCIF1Q9H4Z3 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PCIF1Q9H4Z3 CD37-204ENST00000535669 1674 ntTSL 2 BASIC21.77■■□□□ 1.08
PCIF1Q9H4Z3 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PCIF1Q9H4Z3 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
PCIF1Q9H4Z3 CD99P1-205ENST00000527459 561 ntBASIC21.77■■□□□ 1.08
PCIF1Q9H4Z3 UNC93B5-201ENST00000530315 699 ntBASIC21.77■■□□□ 1.08
PCIF1Q9H4Z3 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC21.77■■□□□ 1.08
PCIF1Q9H4Z3 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC21.77■■□□□ 1.08
PCIF1Q9H4Z3 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PCIF1Q9H4Z3 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
PCIF1Q9H4Z3 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC21.77■■□□□ 1.08
PCIF1Q9H4Z3 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
PCIF1Q9H4Z3 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC21.76■■□□□ 1.07
PCIF1Q9H4Z3 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC21.76■■□□□ 1.07
PCIF1Q9H4Z3 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC21.76■■□□□ 1.07
PCIF1Q9H4Z3 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PCIF1Q9H4Z3 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
PCIF1Q9H4Z3 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
PCIF1Q9H4Z3 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC21.76■■□□□ 1.07
PCIF1Q9H4Z3 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
PCIF1Q9H4Z3 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PCIF1Q9H4Z3 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PCIF1Q9H4Z3 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PCIF1Q9H4Z3 GAS7-202ENST00000396115 929 ntTSL 5 BASIC21.76■■□□□ 1.07
PCIF1Q9H4Z3 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
PCIF1Q9H4Z3 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PCIF1Q9H4Z3 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC21.76■■□□□ 1.07
PCIF1Q9H4Z3 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC21.76■■□□□ 1.07
PCIF1Q9H4Z3 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PCIF1Q9H4Z3 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
PCIF1Q9H4Z3 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
PCIF1Q9H4Z3 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
PCIF1Q9H4Z3 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCIF1Q9H4Z3 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
PCIF1Q9H4Z3 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
PCIF1Q9H4Z3 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCIF1Q9H4Z3 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC21.75■■□□□ 1.07
PCIF1Q9H4Z3 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCIF1Q9H4Z3 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC21.75■■□□□ 1.07
PCIF1Q9H4Z3 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
PCIF1Q9H4Z3 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC21.75■■□□□ 1.07
PCIF1Q9H4Z3 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
PCIF1Q9H4Z3 MIR4651-201ENST00000582622 73 ntBASIC21.75■■□□□ 1.07
PCIF1Q9H4Z3 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
PCIF1Q9H4Z3 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCIF1Q9H4Z3 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCIF1Q9H4Z3 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC21.75■■□□□ 1.07
PCIF1Q9H4Z3 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
PCIF1Q9H4Z3 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
PCIF1Q9H4Z3 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCIF1Q9H4Z3 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
PCIF1Q9H4Z3 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.74■■□□□ 1.07
PCIF1Q9H4Z3 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
PCIF1Q9H4Z3 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCIF1Q9H4Z3 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCIF1Q9H4Z3 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
PCIF1Q9H4Z3 AFG3L1P-217ENST00000557444 2447 ntBASIC21.74■■□□□ 1.07
PCIF1Q9H4Z3 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC21.74■■□□□ 1.07
PCIF1Q9H4Z3 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
PCIF1Q9H4Z3 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
PCIF1Q9H4Z3 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC21.74■■□□□ 1.07
PCIF1Q9H4Z3 UNC93B4-201ENST00000505679 747 ntBASIC21.74■■□□□ 1.07
PCIF1Q9H4Z3 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC21.74■■□□□ 1.07
PCIF1Q9H4Z3 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
PCIF1Q9H4Z3 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
PCIF1Q9H4Z3 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC21.74■■□□□ 1.07
PCIF1Q9H4Z3 KLF2-202ENST00000592003 564 ntTSL 3 BASIC21.74■■□□□ 1.07
PCIF1Q9H4Z3 AC008403.3-201ENST00000598924 454 ntBASIC21.74■■□□□ 1.07
PCIF1Q9H4Z3 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms