Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC22.2■■□□□ 1.15
UPF3AQ9H1J1 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
UPF3AQ9H1J1 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.15
UPF3AQ9H1J1 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
UPF3AQ9H1J1 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
UPF3AQ9H1J1 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC22.2■■□□□ 1.14
UPF3AQ9H1J1 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
UPF3AQ9H1J1 AC104076.2-201ENST00000448912 469 ntBASIC22.2■■□□□ 1.14
UPF3AQ9H1J1 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC22.2■■□□□ 1.14
UPF3AQ9H1J1 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
UPF3AQ9H1J1 DUX4L26-201ENST00000489078 1255 ntBASIC22.2■■□□□ 1.14
UPF3AQ9H1J1 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
UPF3AQ9H1J1 AL121603.2-201ENST00000557373 2117 ntBASIC22.2■■□□□ 1.14
UPF3AQ9H1J1 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
UPF3AQ9H1J1 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC22.2■■□□□ 1.14
UPF3AQ9H1J1 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC22.2■■□□□ 1.14
UPF3AQ9H1J1 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
UPF3AQ9H1J1 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
UPF3AQ9H1J1 AP006587.1-201ENST00000534129 1502 ntBASIC22.2■■□□□ 1.14
UPF3AQ9H1J1 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC22.2■■□□□ 1.14
UPF3AQ9H1J1 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
UPF3AQ9H1J1 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
UPF3AQ9H1J1 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC22.19■■□□□ 1.14
UPF3AQ9H1J1 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
UPF3AQ9H1J1 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
UPF3AQ9H1J1 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC22.19■■□□□ 1.14
UPF3AQ9H1J1 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC22.19■■□□□ 1.14
UPF3AQ9H1J1 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC22.19■■□□□ 1.14
UPF3AQ9H1J1 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC22.19■■□□□ 1.14
UPF3AQ9H1J1 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC22.19■■□□□ 1.14
UPF3AQ9H1J1 DGCR10-201ENST00000609839 495 ntBASIC22.19■■□□□ 1.14
UPF3AQ9H1J1 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC22.19■■□□□ 1.14
UPF3AQ9H1J1 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
UPF3AQ9H1J1 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
UPF3AQ9H1J1 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC22.19■■□□□ 1.14
UPF3AQ9H1J1 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC22.19■■□□□ 1.14
UPF3AQ9H1J1 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
UPF3AQ9H1J1 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC22.19■■□□□ 1.14
UPF3AQ9H1J1 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC22.19■■□□□ 1.14
UPF3AQ9H1J1 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC22.19■■□□□ 1.14
UPF3AQ9H1J1 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
UPF3AQ9H1J1 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
UPF3AQ9H1J1 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
UPF3AQ9H1J1 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
UPF3AQ9H1J1 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
UPF3AQ9H1J1 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
UPF3AQ9H1J1 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
UPF3AQ9H1J1 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
UPF3AQ9H1J1 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC22.18■■□□□ 1.14
UPF3AQ9H1J1 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC22.18■■□□□ 1.14
UPF3AQ9H1J1 GRAMD4P8-201ENST00000605465 1115 ntBASIC22.18■■□□□ 1.14
UPF3AQ9H1J1 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
UPF3AQ9H1J1 MYB-221ENST00000527615 2381 ntTSL 5 BASIC22.18■■□□□ 1.14
UPF3AQ9H1J1 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
UPF3AQ9H1J1 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
UPF3AQ9H1J1 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC22.17■■□□□ 1.14
UPF3AQ9H1J1 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC22.17■■□□□ 1.14
UPF3AQ9H1J1 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
UPF3AQ9H1J1 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC22.17■■□□□ 1.14
UPF3AQ9H1J1 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
UPF3AQ9H1J1 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
UPF3AQ9H1J1 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
UPF3AQ9H1J1 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC22.17■■□□□ 1.14
UPF3AQ9H1J1 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC22.17■■□□□ 1.14
UPF3AQ9H1J1 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
UPF3AQ9H1J1 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC22.17■■□□□ 1.14
UPF3AQ9H1J1 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC22.17■■□□□ 1.14
UPF3AQ9H1J1 B3GAT3P1-201ENST00000471720 806 ntBASIC22.17■■□□□ 1.14
UPF3AQ9H1J1 AC010203.1-204ENST00000548782 407 ntBASIC22.17■■□□□ 1.14
UPF3AQ9H1J1 C2orf69P3-201ENST00000565542 1120 ntBASIC22.17■■□□□ 1.14
UPF3AQ9H1J1 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
UPF3AQ9H1J1 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
UPF3AQ9H1J1 CLN6-221ENST00000637494 765 ntTSL 5 BASIC22.17■■□□□ 1.14
UPF3AQ9H1J1 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC22.17■■□□□ 1.14
UPF3AQ9H1J1 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
UPF3AQ9H1J1 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
UPF3AQ9H1J1 AC116351.2-201ENST00000606540 1585 ntBASIC22.16■■□□□ 1.14
UPF3AQ9H1J1 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
UPF3AQ9H1J1 TSPY14P-201ENST00000303979 915 ntBASIC22.16■■□□□ 1.14
UPF3AQ9H1J1 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC22.16■■□□□ 1.14
UPF3AQ9H1J1 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
UPF3AQ9H1J1 NTF6B-201ENST00000591913 560 ntBASIC22.16■■□□□ 1.14
UPF3AQ9H1J1 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC22.16■■□□□ 1.14
UPF3AQ9H1J1 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC22.16■■□□□ 1.14
UPF3AQ9H1J1 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
UPF3AQ9H1J1 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
UPF3AQ9H1J1 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC22.16■■□□□ 1.14
UPF3AQ9H1J1 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC22.16■■□□□ 1.14
UPF3AQ9H1J1 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
UPF3AQ9H1J1 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC22.15■■□□□ 1.14
UPF3AQ9H1J1 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
UPF3AQ9H1J1 PRR31-201ENST00000371629 978 ntTSL 2 BASIC22.15■■□□□ 1.14
UPF3AQ9H1J1 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC22.15■■□□□ 1.14
UPF3AQ9H1J1 YBX1P10-201ENST00000444752 975 ntBASIC22.15■■□□□ 1.14
UPF3AQ9H1J1 AC011506.1-201ENST00000474329 610 ntBASIC22.15■■□□□ 1.14
UPF3AQ9H1J1 KRT18P16-201ENST00000510337 1294 ntBASIC22.15■■□□□ 1.14
UPF3AQ9H1J1 EGLN1P1-201ENST00000531623 762 ntBASIC22.15■■□□□ 1.14
UPF3AQ9H1J1 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC22.15■■□□□ 1.14
UPF3AQ9H1J1 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
UPF3AQ9H1J1 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms