Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC21.8■■□□□ 1.08
TRAIPQ9BWF2 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
TRAIPQ9BWF2 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
TRAIPQ9BWF2 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
TRAIPQ9BWF2 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
TRAIPQ9BWF2 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
TRAIPQ9BWF2 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
TRAIPQ9BWF2 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC21.8■■□□□ 1.08
TRAIPQ9BWF2 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC21.8■■□□□ 1.08
TRAIPQ9BWF2 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC21.8■■□□□ 1.08
TRAIPQ9BWF2 AL121906.2-201ENST00000621597 723 ntBASIC21.8■■□□□ 1.08
TRAIPQ9BWF2 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
TRAIPQ9BWF2 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
TRAIPQ9BWF2 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
TRAIPQ9BWF2 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
TRAIPQ9BWF2 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
TRAIPQ9BWF2 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
TRAIPQ9BWF2 KRT17P2-201ENST00000300992 1314 ntBASIC21.8■■□□□ 1.08
TRAIPQ9BWF2 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC21.79■■□□□ 1.08
TRAIPQ9BWF2 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
TRAIPQ9BWF2 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
TRAIPQ9BWF2 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
TRAIPQ9BWF2 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC21.79■■□□□ 1.08
TRAIPQ9BWF2 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
TRAIPQ9BWF2 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
TRAIPQ9BWF2 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC21.79■■□□□ 1.08
TRAIPQ9BWF2 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC21.79■■□□□ 1.08
TRAIPQ9BWF2 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
TRAIPQ9BWF2 KRT16P5-201ENST00000455284 522 ntBASIC21.79■■□□□ 1.08
TRAIPQ9BWF2 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC21.79■■□□□ 1.08
TRAIPQ9BWF2 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
TRAIPQ9BWF2 AC073912.3-201ENST00000624414 853 ntBASIC21.79■■□□□ 1.08
TRAIPQ9BWF2 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
TRAIPQ9BWF2 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC21.79■■□□□ 1.08
TRAIPQ9BWF2 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
TRAIPQ9BWF2 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
TRAIPQ9BWF2 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
TRAIPQ9BWF2 AL121603.2-201ENST00000557373 2117 ntBASIC21.79■■□□□ 1.08
TRAIPQ9BWF2 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TRAIPQ9BWF2 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
TRAIPQ9BWF2 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
TRAIPQ9BWF2 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TRAIPQ9BWF2 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
TRAIPQ9BWF2 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TRAIPQ9BWF2 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
TRAIPQ9BWF2 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TRAIPQ9BWF2 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
TRAIPQ9BWF2 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC21.78■■□□□ 1.08
TRAIPQ9BWF2 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC21.78■■□□□ 1.08
TRAIPQ9BWF2 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
TRAIPQ9BWF2 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC21.78■■□□□ 1.08
TRAIPQ9BWF2 AL031963.3-201ENST00000606441 850 ntBASIC21.78■■□□□ 1.08
TRAIPQ9BWF2 AC113410.3-201ENST00000623366 203 ntBASIC21.78■■□□□ 1.08
TRAIPQ9BWF2 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
TRAIPQ9BWF2 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TRAIPQ9BWF2 KRT8P20-201ENST00000423953 1409 ntBASIC21.78■■□□□ 1.08
TRAIPQ9BWF2 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TRAIPQ9BWF2 AC124283.5-201ENST00000624661 1809 ntBASIC21.78■■□□□ 1.08
TRAIPQ9BWF2 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
TRAIPQ9BWF2 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TRAIPQ9BWF2 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC21.77■■□□□ 1.08
TRAIPQ9BWF2 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TRAIPQ9BWF2 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC21.77■■□□□ 1.08
TRAIPQ9BWF2 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC21.77■■□□□ 1.08
TRAIPQ9BWF2 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC21.77■■□□□ 1.08
TRAIPQ9BWF2 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TRAIPQ9BWF2 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TRAIPQ9BWF2 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
TRAIPQ9BWF2 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC21.77■■□□□ 1.08
TRAIPQ9BWF2 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
TRAIPQ9BWF2 GXYLT1P3-201ENST00000453058 1193 ntBASIC21.77■■□□□ 1.08
TRAIPQ9BWF2 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
TRAIPQ9BWF2 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC21.77■■□□□ 1.08
TRAIPQ9BWF2 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
TRAIPQ9BWF2 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TRAIPQ9BWF2 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TRAIPQ9BWF2 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
TRAIPQ9BWF2 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
TRAIPQ9BWF2 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
TRAIPQ9BWF2 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
TRAIPQ9BWF2 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
TRAIPQ9BWF2 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
TRAIPQ9BWF2 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
TRAIPQ9BWF2 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
TRAIPQ9BWF2 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
TRAIPQ9BWF2 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC21.76■■□□□ 1.07
TRAIPQ9BWF2 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC21.76■■□□□ 1.07
TRAIPQ9BWF2 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC21.76■■□□□ 1.07
TRAIPQ9BWF2 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
TRAIPQ9BWF2 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC21.76■■□□□ 1.07
TRAIPQ9BWF2 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TRAIPQ9BWF2 NBPF21P-201ENST00000425093 1451 ntBASIC21.76■■□□□ 1.07
TRAIPQ9BWF2 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC21.76■■□□□ 1.07
TRAIPQ9BWF2 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TRAIPQ9BWF2 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC21.76■■□□□ 1.07
TRAIPQ9BWF2 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC21.76■■□□□ 1.07
TRAIPQ9BWF2 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
TRAIPQ9BWF2 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.75■■□□□ 1.07
TRAIPQ9BWF2 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRAIPQ9BWF2 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms