Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC17.5■□□□□ 0.39
COL12A1Q99715 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC17.5■□□□□ 0.39
COL12A1Q99715 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC17.5■□□□□ 0.39
COL12A1Q99715 GXYLT1P4-201ENST00000613576 1192 ntBASIC17.5■□□□□ 0.39
COL12A1Q99715 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
COL12A1Q99715 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL12A1Q99715 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC17.49■□□□□ 0.39
COL12A1Q99715 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC17.49■□□□□ 0.39
COL12A1Q99715 EMBP1-201ENST00000458200 901 ntBASIC17.49■□□□□ 0.39
COL12A1Q99715 FDX2-206ENST00000492239 773 ntTSL 2 BASIC17.49■□□□□ 0.39
COL12A1Q99715 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC17.49■□□□□ 0.39
COL12A1Q99715 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC17.49■□□□□ 0.39
COL12A1Q99715 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL12A1Q99715 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
COL12A1Q99715 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL12A1Q99715 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL12A1Q99715 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL12A1Q99715 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL12A1Q99715 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC17.49■□□□□ 0.39
COL12A1Q99715 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC17.49■□□□□ 0.39
COL12A1Q99715 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL12A1Q99715 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC17.49■□□□□ 0.39
COL12A1Q99715 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
COL12A1Q99715 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL12A1Q99715 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL12A1Q99715 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL12A1Q99715 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC17.49■□□□□ 0.39
COL12A1Q99715 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL12A1Q99715 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
COL12A1Q99715 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC17.49■□□□□ 0.39
COL12A1Q99715 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17.49■□□□□ 0.39
COL12A1Q99715 CCR12P-201ENST00000446203 998 ntBASIC17.49■□□□□ 0.39
COL12A1Q99715 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC17.49■□□□□ 0.39
COL12A1Q99715 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC17.49■□□□□ 0.39
COL12A1Q99715 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL12A1Q99715 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL12A1Q99715 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC17.48■□□□□ 0.39
COL12A1Q99715 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
COL12A1Q99715 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC17.48■□□□□ 0.39
COL12A1Q99715 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC17.48■□□□□ 0.39
COL12A1Q99715 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL12A1Q99715 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL12A1Q99715 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
COL12A1Q99715 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC17.48■□□□□ 0.39
COL12A1Q99715 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL12A1Q99715 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC17.48■□□□□ 0.39
COL12A1Q99715 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC17.48■□□□□ 0.39
COL12A1Q99715 CASK-201ENST00000378154 2494 ntTSL 5 BASIC17.47■□□□□ 0.39
COL12A1Q99715 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC17.47■□□□□ 0.39
COL12A1Q99715 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL12A1Q99715 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
COL12A1Q99715 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL12A1Q99715 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL12A1Q99715 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC17.47■□□□□ 0.39
COL12A1Q99715 MIR3652-201ENST00000579335 131 ntBASIC17.47■□□□□ 0.39
COL12A1Q99715 MIR3180-1-201ENST00000580374 94 ntBASIC17.47■□□□□ 0.39
COL12A1Q99715 MIR3180-3-201ENST00000584616 94 ntBASIC17.47■□□□□ 0.39
COL12A1Q99715 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC17.47■□□□□ 0.39
COL12A1Q99715 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL12A1Q99715 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
COL12A1Q99715 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC17.47■□□□□ 0.39
COL12A1Q99715 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
COL12A1Q99715 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC17.47■□□□□ 0.39
COL12A1Q99715 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL12A1Q99715 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
COL12A1Q99715 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL12A1Q99715 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC17.47■□□□□ 0.39
COL12A1Q99715 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC17.47■□□□□ 0.39
COL12A1Q99715 ETFA-216ENST00000560726 942 ntTSL 3 BASIC17.47■□□□□ 0.39
COL12A1Q99715 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.47■□□□□ 0.39
COL12A1Q99715 AL732292.2-201ENST00000609649 430 ntBASIC17.47■□□□□ 0.39
COL12A1Q99715 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL12A1Q99715 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC17.46■□□□□ 0.39
COL12A1Q99715 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL12A1Q99715 HOTTIP_1.1-201ENST00000620415 57 ntBASIC17.46■□□□□ 0.39
COL12A1Q99715 HYMAI.1-201ENST00000620949 238 ntBASIC17.46■□□□□ 0.39
COL12A1Q99715 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
COL12A1Q99715 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
COL12A1Q99715 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL12A1Q99715 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL12A1Q99715 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL12A1Q99715 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC17.46■□□□□ 0.39
COL12A1Q99715 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL12A1Q99715 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC17.46■□□□□ 0.39
COL12A1Q99715 AC023632.3-201ENST00000521633 145 ntBASIC17.46■□□□□ 0.39
COL12A1Q99715 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL12A1Q99715 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
COL12A1Q99715 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL12A1Q99715 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC17.46■□□□□ 0.39
COL12A1Q99715 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL12A1Q99715 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
COL12A1Q99715 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.38
COL12A1Q99715 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC17.46■□□□□ 0.38
COL12A1Q99715 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.38
COL12A1Q99715 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC17.46■□□□□ 0.38
COL12A1Q99715 AC011506.1-201ENST00000474329 610 ntBASIC17.46■□□□□ 0.38
COL12A1Q99715 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
COL12A1Q99715 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC17.45■□□□□ 0.38
COL12A1Q99715 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC17.45■□□□□ 0.38
COL12A1Q99715 SDHD-206ENST00000528182 754 ntTSL 3 BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms