Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
BEST3Q8N1M1 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
BEST3Q8N1M1 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
BEST3Q8N1M1 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC18.45■□□□□ 0.54
BEST3Q8N1M1 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
BEST3Q8N1M1 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC18.45■□□□□ 0.54
BEST3Q8N1M1 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC18.45■□□□□ 0.54
BEST3Q8N1M1 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
BEST3Q8N1M1 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
BEST3Q8N1M1 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.45■□□□□ 0.54
BEST3Q8N1M1 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
BEST3Q8N1M1 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
BEST3Q8N1M1 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
BEST3Q8N1M1 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
BEST3Q8N1M1 PTBP1P-201ENST00000554374 1601 ntBASIC18.45■□□□□ 0.54
BEST3Q8N1M1 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC18.45■□□□□ 0.54
BEST3Q8N1M1 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
BEST3Q8N1M1 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
BEST3Q8N1M1 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC18.44■□□□□ 0.54
BEST3Q8N1M1 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
BEST3Q8N1M1 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
BEST3Q8N1M1 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC18.44■□□□□ 0.54
BEST3Q8N1M1 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
BEST3Q8N1M1 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC18.44■□□□□ 0.54
BEST3Q8N1M1 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
BEST3Q8N1M1 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC18.44■□□□□ 0.54
BEST3Q8N1M1 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
BEST3Q8N1M1 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
BEST3Q8N1M1 HLA-G-202ENST00000376815 851 ntBASIC18.44■□□□□ 0.54
BEST3Q8N1M1 HLA-G-203ENST00000376818 1127 ntBASIC18.44■□□□□ 0.54
BEST3Q8N1M1 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
BEST3Q8N1M1 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
BEST3Q8N1M1 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC18.44■□□□□ 0.54
BEST3Q8N1M1 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC18.44■□□□□ 0.54
BEST3Q8N1M1 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
BEST3Q8N1M1 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
BEST3Q8N1M1 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
BEST3Q8N1M1 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
BEST3Q8N1M1 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
BEST3Q8N1M1 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC18.44■□□□□ 0.54
BEST3Q8N1M1 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
BEST3Q8N1M1 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
BEST3Q8N1M1 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
BEST3Q8N1M1 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
BEST3Q8N1M1 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
BEST3Q8N1M1 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
BEST3Q8N1M1 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
BEST3Q8N1M1 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
BEST3Q8N1M1 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
BEST3Q8N1M1 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
BEST3Q8N1M1 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
BEST3Q8N1M1 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC18.43■□□□□ 0.54
BEST3Q8N1M1 SNORA78-201ENST00000459373 127 ntBASIC18.43■□□□□ 0.54
BEST3Q8N1M1 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
BEST3Q8N1M1 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
BEST3Q8N1M1 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC18.43■□□□□ 0.54
BEST3Q8N1M1 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC18.43■□□□□ 0.54
BEST3Q8N1M1 MIR4497-201ENST00000583208 89 ntBASIC18.43■□□□□ 0.54
BEST3Q8N1M1 AL121829.2-201ENST00000620908 328 ntBASIC18.43■□□□□ 0.54
BEST3Q8N1M1 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
BEST3Q8N1M1 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
BEST3Q8N1M1 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
BEST3Q8N1M1 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.43■□□□□ 0.54
BEST3Q8N1M1 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
BEST3Q8N1M1 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
BEST3Q8N1M1 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
BEST3Q8N1M1 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
BEST3Q8N1M1 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
BEST3Q8N1M1 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
BEST3Q8N1M1 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC18.43■□□□□ 0.54
BEST3Q8N1M1 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
BEST3Q8N1M1 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC18.43■□□□□ 0.54
BEST3Q8N1M1 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC18.42■□□□□ 0.54
BEST3Q8N1M1 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
BEST3Q8N1M1 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
BEST3Q8N1M1 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
BEST3Q8N1M1 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
BEST3Q8N1M1 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.42■□□□□ 0.54
BEST3Q8N1M1 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
BEST3Q8N1M1 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
BEST3Q8N1M1 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
BEST3Q8N1M1 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
BEST3Q8N1M1 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
BEST3Q8N1M1 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
BEST3Q8N1M1 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC18.42■□□□□ 0.54
BEST3Q8N1M1 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
BEST3Q8N1M1 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
BEST3Q8N1M1 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC18.42■□□□□ 0.54
BEST3Q8N1M1 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC18.42■□□□□ 0.54
BEST3Q8N1M1 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
BEST3Q8N1M1 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.42■□□□□ 0.54
BEST3Q8N1M1 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.42■□□□□ 0.54
BEST3Q8N1M1 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC18.42■□□□□ 0.54
BEST3Q8N1M1 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
BEST3Q8N1M1 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC18.42■□□□□ 0.54
BEST3Q8N1M1 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
BEST3Q8N1M1 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
BEST3Q8N1M1 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
BEST3Q8N1M1 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
BEST3Q8N1M1 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms