Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SKA3Q8IX90 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SKA3Q8IX90 KRT8P20-201ENST00000423953 1409 ntBASIC17.56■□□□□ 0.4
SKA3Q8IX90 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
SKA3Q8IX90 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC17.56■□□□□ 0.4
SKA3Q8IX90 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC17.56■□□□□ 0.4
SKA3Q8IX90 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SKA3Q8IX90 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SKA3Q8IX90 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SKA3Q8IX90 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC17.56■□□□□ 0.4
SKA3Q8IX90 AL031963.3-201ENST00000606441 850 ntBASIC17.56■□□□□ 0.4
SKA3Q8IX90 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
SKA3Q8IX90 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC17.56■□□□□ 0.4
SKA3Q8IX90 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC17.56■□□□□ 0.4
SKA3Q8IX90 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SKA3Q8IX90 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
SKA3Q8IX90 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC17.56■□□□□ 0.4
SKA3Q8IX90 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SKA3Q8IX90 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SKA3Q8IX90 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
SKA3Q8IX90 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SKA3Q8IX90 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
SKA3Q8IX90 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
SKA3Q8IX90 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
SKA3Q8IX90 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC17.56■□□□□ 0.4
SKA3Q8IX90 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC17.56■□□□□ 0.4
SKA3Q8IX90 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SKA3Q8IX90 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
SKA3Q8IX90 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC17.55■□□□□ 0.4
SKA3Q8IX90 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SKA3Q8IX90 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
SKA3Q8IX90 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC17.55■□□□□ 0.4
SKA3Q8IX90 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC17.55■□□□□ 0.4
SKA3Q8IX90 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SKA3Q8IX90 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SKA3Q8IX90 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SKA3Q8IX90 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC17.55■□□□□ 0.4
SKA3Q8IX90 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
SKA3Q8IX90 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SKA3Q8IX90 AC112907.3-201ENST00000577781 2400 ntBASIC17.55■□□□□ 0.4
SKA3Q8IX90 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
SKA3Q8IX90 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SKA3Q8IX90 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SKA3Q8IX90 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SKA3Q8IX90 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SKA3Q8IX90 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
SKA3Q8IX90 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC17.55■□□□□ 0.4
SKA3Q8IX90 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SKA3Q8IX90 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SKA3Q8IX90 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
SKA3Q8IX90 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SKA3Q8IX90 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SKA3Q8IX90 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SKA3Q8IX90 MCC-208ENST00000514701 2855 ntTSL 2 BASIC17.54■□□□□ 0.4
SKA3Q8IX90 AC138932.1-201ENST00000534164 6830 ntBASIC17.54■□□□□ 0.4
SKA3Q8IX90 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC17.54■□□□□ 0.4
SKA3Q8IX90 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SKA3Q8IX90 BX119927.1-201ENST00000636596 1552 ntBASIC17.54■□□□□ 0.4
SKA3Q8IX90 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SKA3Q8IX90 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SKA3Q8IX90 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SKA3Q8IX90 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC17.54■□□□□ 0.4
SKA3Q8IX90 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
SKA3Q8IX90 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SKA3Q8IX90 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC17.54■□□□□ 0.4
SKA3Q8IX90 HLA-G-202ENST00000376815 851 ntBASIC17.54■□□□□ 0.4
SKA3Q8IX90 HLA-G-203ENST00000376818 1127 ntBASIC17.54■□□□□ 0.4
SKA3Q8IX90 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SKA3Q8IX90 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SKA3Q8IX90 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC17.54■□□□□ 0.4
SKA3Q8IX90 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SKA3Q8IX90 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC17.54■□□□□ 0.4
SKA3Q8IX90 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC17.54■□□□□ 0.4
SKA3Q8IX90 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SKA3Q8IX90 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SKA3Q8IX90 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC17.54■□□□□ 0.4
SKA3Q8IX90 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SKA3Q8IX90 AL020996.1-203ENST00000536896 2307 ntBASIC17.54■□□□□ 0.4
SKA3Q8IX90 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC17.54■□□□□ 0.4
SKA3Q8IX90 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC17.54■□□□□ 0.4
SKA3Q8IX90 ADM-207ENST00000530439 1839 ntTSL 2 BASIC17.54■□□□□ 0.4
SKA3Q8IX90 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SKA3Q8IX90 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SKA3Q8IX90 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
SKA3Q8IX90 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SKA3Q8IX90 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
SKA3Q8IX90 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SKA3Q8IX90 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SKA3Q8IX90 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SKA3Q8IX90 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
SKA3Q8IX90 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SKA3Q8IX90 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC17.53■□□□□ 0.4
SKA3Q8IX90 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC17.53■□□□□ 0.4
SKA3Q8IX90 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SKA3Q8IX90 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC17.53■□□□□ 0.4
SKA3Q8IX90 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SKA3Q8IX90 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC17.53■□□□□ 0.4
SKA3Q8IX90 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC17.53■□□□□ 0.4
SKA3Q8IX90 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC17.53■□□□□ 0.4
SKA3Q8IX90 HLA-B-256ENST00000639848 1089 ntBASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms