Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LDB3O75112 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC18.73■□□□□ 0.59
LDB3O75112 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC18.73■□□□□ 0.59
LDB3O75112 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
LDB3O75112 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LDB3O75112 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LDB3O75112 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LDB3O75112 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LDB3O75112 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
LDB3O75112 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LDB3O75112 AC124283.5-201ENST00000624661 1809 ntBASIC18.73■□□□□ 0.59
LDB3O75112 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
LDB3O75112 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
LDB3O75112 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.73■□□□□ 0.59
LDB3O75112 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC18.73■□□□□ 0.59
LDB3O75112 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LDB3O75112 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LDB3O75112 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LDB3O75112 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LDB3O75112 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LDB3O75112 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
LDB3O75112 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LDB3O75112 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC18.72■□□□□ 0.59
LDB3O75112 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
LDB3O75112 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LDB3O75112 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC18.72■□□□□ 0.59
LDB3O75112 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
LDB3O75112 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LDB3O75112 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LDB3O75112 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC18.72■□□□□ 0.59
LDB3O75112 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
LDB3O75112 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
LDB3O75112 UNC93B4-201ENST00000505679 747 ntBASIC18.72■□□□□ 0.59
LDB3O75112 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LDB3O75112 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC18.72■□□□□ 0.59
LDB3O75112 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.72■□□□□ 0.59
LDB3O75112 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LDB3O75112 TCF3P1-201ENST00000423021 1937 ntBASIC18.72■□□□□ 0.59
LDB3O75112 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC18.72■□□□□ 0.59
LDB3O75112 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LDB3O75112 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LDB3O75112 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC18.72■□□□□ 0.59
LDB3O75112 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LDB3O75112 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LDB3O75112 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LDB3O75112 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LDB3O75112 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LDB3O75112 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LDB3O75112 MOK-225ENST00000522867 1883 ntTSL 5 BASIC18.71■□□□□ 0.59
LDB3O75112 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC18.71■□□□□ 0.59
LDB3O75112 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LDB3O75112 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LDB3O75112 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC18.71■□□□□ 0.59
LDB3O75112 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
LDB3O75112 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC18.71■□□□□ 0.59
LDB3O75112 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LDB3O75112 CD37-204ENST00000535669 1674 ntTSL 2 BASIC18.71■□□□□ 0.59
LDB3O75112 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LDB3O75112 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LDB3O75112 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LDB3O75112 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC18.71■□□□□ 0.59
LDB3O75112 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC18.71■□□□□ 0.59
LDB3O75112 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
LDB3O75112 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC18.71■□□□□ 0.59
LDB3O75112 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC18.71■□□□□ 0.59
LDB3O75112 AP003097.1-201ENST00000530657 1135 ntBASIC18.71■□□□□ 0.59
LDB3O75112 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LDB3O75112 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.71■□□□□ 0.59
LDB3O75112 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
LDB3O75112 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.71■□□□□ 0.59
LDB3O75112 AC008687.6-201ENST00000596318 630 ntBASIC18.71■□□□□ 0.59
LDB3O75112 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.71■□□□□ 0.59
LDB3O75112 AC008403.3-201ENST00000598924 454 ntBASIC18.71■□□□□ 0.59
LDB3O75112 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC18.71■□□□□ 0.59
LDB3O75112 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC18.71■□□□□ 0.59
LDB3O75112 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LDB3O75112 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LDB3O75112 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LDB3O75112 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC18.71■□□□□ 0.59
LDB3O75112 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC18.71■□□□□ 0.59
LDB3O75112 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
LDB3O75112 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
LDB3O75112 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.71■□□□□ 0.59
LDB3O75112 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC18.71■□□□□ 0.59
LDB3O75112 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC18.71■□□□□ 0.59
LDB3O75112 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC18.7■□□□□ 0.58
LDB3O75112 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC18.7■□□□□ 0.58
LDB3O75112 SLC25A24-204ENST00000569674 2357 ntBASIC18.7■□□□□ 0.58
LDB3O75112 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
LDB3O75112 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
LDB3O75112 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.7■□□□□ 0.58
LDB3O75112 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LDB3O75112 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
LDB3O75112 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
LDB3O75112 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
LDB3O75112 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LDB3O75112 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.7■□□□□ 0.58
LDB3O75112 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC18.7■□□□□ 0.58
LDB3O75112 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LDB3O75112 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms