Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC25.18■■□□□ 1.62
CACNA1FO60840 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC25.18■■□□□ 1.62
CACNA1FO60840 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CACNA1FO60840 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CACNA1FO60840 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC25.17■■□□□ 1.62
CACNA1FO60840 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC25.17■■□□□ 1.62
CACNA1FO60840 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
CACNA1FO60840 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
CACNA1FO60840 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CACNA1FO60840 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CACNA1FO60840 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC25.17■■□□□ 1.62
CACNA1FO60840 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
CACNA1FO60840 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC25.17■■□□□ 1.62
CACNA1FO60840 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CACNA1FO60840 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC25.17■■□□□ 1.62
CACNA1FO60840 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CACNA1FO60840 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC25.17■■□□□ 1.62
CACNA1FO60840 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CACNA1FO60840 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CACNA1FO60840 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CACNA1FO60840 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC25.16■■□□□ 1.62
CACNA1FO60840 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC25.16■■□□□ 1.62
CACNA1FO60840 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CACNA1FO60840 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC25.16■■□□□ 1.62
CACNA1FO60840 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC25.16■■□□□ 1.62
CACNA1FO60840 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CACNA1FO60840 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CACNA1FO60840 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC25.16■■□□□ 1.62
CACNA1FO60840 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC25.16■■□□□ 1.62
CACNA1FO60840 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC25.16■■□□□ 1.62
CACNA1FO60840 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC25.16■■□□□ 1.62
CACNA1FO60840 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC25.16■■□□□ 1.62
CACNA1FO60840 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CACNA1FO60840 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
CACNA1FO60840 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC25.15■■□□□ 1.62
CACNA1FO60840 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC25.15■■□□□ 1.62
CACNA1FO60840 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC25.15■■□□□ 1.62
CACNA1FO60840 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
CACNA1FO60840 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC25.15■■□□□ 1.62
CACNA1FO60840 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC25.15■■□□□ 1.62
CACNA1FO60840 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
CACNA1FO60840 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CACNA1FO60840 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC25.15■■□□□ 1.62
CACNA1FO60840 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC25.15■■□□□ 1.62
CACNA1FO60840 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC25.15■■□□□ 1.62
CACNA1FO60840 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
CACNA1FO60840 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CACNA1FO60840 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC25.15■■□□□ 1.62
CACNA1FO60840 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC25.14■■□□□ 1.62
CACNA1FO60840 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC25.14■■□□□ 1.62
CACNA1FO60840 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC25.14■■□□□ 1.62
CACNA1FO60840 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
CACNA1FO60840 AC008550.1-201ENST00000511500 884 ntBASIC25.14■■□□□ 1.62
CACNA1FO60840 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC25.14■■□□□ 1.62
CACNA1FO60840 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
CACNA1FO60840 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
CACNA1FO60840 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
CACNA1FO60840 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
CACNA1FO60840 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC25.14■■□□□ 1.61
CACNA1FO60840 GRAP-204ENST00000573099 846 ntTSL 3 BASIC25.14■■□□□ 1.61
CACNA1FO60840 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
CACNA1FO60840 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC25.13■■□□□ 1.61
CACNA1FO60840 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC25.13■■□□□ 1.61
CACNA1FO60840 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CACNA1FO60840 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CACNA1FO60840 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CACNA1FO60840 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
CACNA1FO60840 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
CACNA1FO60840 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
CACNA1FO60840 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
CACNA1FO60840 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC25.13■■□□□ 1.61
CACNA1FO60840 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC25.13■■□□□ 1.61
CACNA1FO60840 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
CACNA1FO60840 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
CACNA1FO60840 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC25.13■■□□□ 1.61
CACNA1FO60840 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
CACNA1FO60840 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC25.13■■□□□ 1.61
CACNA1FO60840 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
CACNA1FO60840 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC25.13■■□□□ 1.61
CACNA1FO60840 TMEM179-206ENST00000616017 1645 ntBASIC25.12■■□□□ 1.61
CACNA1FO60840 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC25.12■■□□□ 1.61
CACNA1FO60840 KRT8P8-201ENST00000434750 1448 ntBASIC25.12■■□□□ 1.61
CACNA1FO60840 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
CACNA1FO60840 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CACNA1FO60840 NIFKP9-201ENST00000419265 221 ntBASIC25.12■■□□□ 1.61
CACNA1FO60840 DET1-205ENST00000558413 583 ntTSL 4 BASIC25.12■■□□□ 1.61
CACNA1FO60840 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC25.12■■□□□ 1.61
CACNA1FO60840 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
CACNA1FO60840 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
CACNA1FO60840 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
CACNA1FO60840 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC25.12■■□□□ 1.61
CACNA1FO60840 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC25.12■■□□□ 1.61
CACNA1FO60840 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC25.12■■□□□ 1.61
CACNA1FO60840 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC25.12■■□□□ 1.61
CACNA1FO60840 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
CACNA1FO60840 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CACNA1FO60840 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC25.11■■□□□ 1.61
CACNA1FO60840 AC004264.1-201ENST00000608354 794 ntBASIC25.11■■□□□ 1.61
CACNA1FO60840 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
CACNA1FO60840 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms