Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC21.31■■□□□ 1
FOXN3O00409 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
FOXN3O00409 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
FOXN3O00409 SERPINH1P1-201ENST00000419794 1249 ntBASIC21.31■■□□□ 1
FOXN3O00409 DUSP5P2-201ENST00000426873 1033 ntBASIC21.31■■□□□ 1
FOXN3O00409 NME6-213ENST00000451657 871 ntTSL 2 BASIC21.31■■□□□ 1
FOXN3O00409 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC21.31■■□□□ 1
FOXN3O00409 TK2-208ENST00000545043 1120 ntTSL 2 BASIC21.31■■□□□ 1
FOXN3O00409 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC21.31■■□□□ 1
FOXN3O00409 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
FOXN3O00409 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
FOXN3O00409 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
FOXN3O00409 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC21.31■■□□□ 1
FOXN3O00409 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC21.31■■□□□ 1
FOXN3O00409 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC21.31■■□□□ 1
FOXN3O00409 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
FOXN3O00409 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
FOXN3O00409 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
FOXN3O00409 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
FOXN3O00409 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC21.3■■□□□ 1
FOXN3O00409 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
FOXN3O00409 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC21.3■■□□□ 1
FOXN3O00409 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC21.3■■□□□ 1
FOXN3O00409 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
FOXN3O00409 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
FOXN3O00409 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
FOXN3O00409 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
FOXN3O00409 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC21.3■■□□□ 1
FOXN3O00409 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
FOXN3O00409 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC21.3■■□□□ 1
FOXN3O00409 AC092118.2-201ENST00000613495 667 ntBASIC21.3■■□□□ 1
FOXN3O00409 GXYLT1P5-201ENST00000614548 1189 ntBASIC21.3■■□□□ 1
FOXN3O00409 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
FOXN3O00409 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC21.3■■□□□ 1
FOXN3O00409 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
FOXN3O00409 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
FOXN3O00409 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC21.3■■□□□ 1
FOXN3O00409 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC21.29■■□□□ 1
FOXN3O00409 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC21.29■■□□□ 1
FOXN3O00409 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC21.29■■□□□ 1
FOXN3O00409 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC21.29■■□□□ 1
FOXN3O00409 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
FOXN3O00409 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.29■■□□□ 1
FOXN3O00409 TREX1-205ENST00000625293 1783 ntBASIC21.29■■□□□ 1
FOXN3O00409 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC21.29■■□□□ 1
FOXN3O00409 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC21.29■■□□□ 1
FOXN3O00409 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC21.29■■□□□ 1
FOXN3O00409 MFF-205ENST00000354503 1085 ntTSL 2 BASIC21.29■■□□□ 1
FOXN3O00409 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
FOXN3O00409 SLC29A4P1-201ENST00000398760 971 ntBASIC21.29■■□□□ 1
FOXN3O00409 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC21.29■■□□□ 1
FOXN3O00409 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC21.29■■□□□ 1
FOXN3O00409 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC21.29■■□□□ 1
FOXN3O00409 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
FOXN3O00409 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
FOXN3O00409 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC21.29■■□□□ 1
FOXN3O00409 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC21.29■■□□□ 1
FOXN3O00409 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC21.29■■□□□ 1
FOXN3O00409 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
FOXN3O00409 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
FOXN3O00409 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
FOXN3O00409 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
FOXN3O00409 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
FOXN3O00409 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC21.28■■□□□ 1
FOXN3O00409 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC21.28■■□□□ 1
FOXN3O00409 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
FOXN3O00409 AC091874.3-201ENST00000512672 1195 ntBASIC21.28■■□□□ 1
FOXN3O00409 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC21.28■■□□□ 1
FOXN3O00409 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
FOXN3O00409 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC21.28■■□□□ 1
FOXN3O00409 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC21.28■■□□□ 1
FOXN3O00409 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC21.28■■□□□ 1
FOXN3O00409 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
FOXN3O00409 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC21.28■■□□□ 1
FOXN3O00409 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
FOXN3O00409 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC21.28■■□□□ 1
FOXN3O00409 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
FOXN3O00409 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC21.27■■□□□ 1
FOXN3O00409 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC21.27■■□□□ 1
FOXN3O00409 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
FOXN3O00409 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC21.27■■□□□ 1
FOXN3O00409 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
FOXN3O00409 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC21.27■■□□□ 1
FOXN3O00409 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC21.27■■□□□ 1
FOXN3O00409 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
FOXN3O00409 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC21.27■■□□□ 1
FOXN3O00409 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC21.27■■□□□ 1
FOXN3O00409 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC21.27■■□□□ 1
FOXN3O00409 GAMT-205ENST00000640762 751 ntTSL 5 BASIC21.27■■□□□ 1
FOXN3O00409 PWWP2AP1-201ENST00000429776 2273 ntBASIC21.27■■□□□ 1
FOXN3O00409 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC21.27■■□□□ 1
FOXN3O00409 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC21.27■■□□□ 1
FOXN3O00409 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
FOXN3O00409 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC21.27■□□□□ 0.99
FOXN3O00409 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
FOXN3O00409 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
FOXN3O00409 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
FOXN3O00409 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
FOXN3O00409 PHGDH-210ENST00000641115 1638 ntBASIC21.26■□□□□ 0.99
FOXN3O00409 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms