Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AL138895.2-201ENST00000603019 178 ntBASIC6.4□□□□□ -1.38
COL5A1P20908 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC6.4□□□□□ -1.38
COL5A1P20908 PCGEM1-202ENST00000606314 759 ntTSL 5 BASIC6.4□□□□□ -1.38
COL5A1P20908 AC073389.3-201ENST00000609434 935 ntBASIC6.4□□□□□ -1.38
COL5A1P20908 AC027348.2-201ENST00000624375 642 ntBASIC6.4□□□□□ -1.38
COL5A1P20908 SRGAP2-203ENST00000573034 6301 ntAPPRIS P3 TSL 1 (best) BASIC6.4□□□□□ -1.39
COL5A1P20908 JADE1-203ENST00000452328 5544 ntAPPRIS ALT2 TSL 2 BASIC6.4□□□□□ -1.39
COL5A1P20908 EIF2A-202ENST00000406576 1795 ntTSL 2 BASIC6.4□□□□□ -1.39
COL5A1P20908 ACSL1-212ENST00000622937 4103 ntTSL 2 BASIC6.4□□□□□ -1.39
COL5A1P20908 GABPB2-201ENST00000368916 1680 ntAPPRIS ALT2 TSL 5 BASIC6.4□□□□□ -1.39
COL5A1P20908 PPARGC1B-201ENST00000309241 10568 ntAPPRIS P3 TSL 1 (best) BASIC6.4□□□□□ -1.39
COL5A1P20908 CGNL1-201ENST00000281282 7224 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
COL5A1P20908 LNPEP-201ENST00000231368 12752 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
COL5A1P20908 CHRM5-202ENST00000557872 2687 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
COL5A1P20908 SMG1P5-202ENST00000529428 4219 ntBASIC6.4□□□□□ -1.39
COL5A1P20908 SMG1P2-201ENST00000566127 4221 ntBASIC6.4□□□□□ -1.39
COL5A1P20908 SMG1P4-203ENST00000517529 1589 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
COL5A1P20908 LCP2-206ENST00000521416 1599 ntTSL 2 BASIC6.4□□□□□ -1.39
COL5A1P20908 ZNF841-202ENST00000426391 3620 ntTSL 2 BASIC6.4□□□□□ -1.39
COL5A1P20908 PLN-201ENST00000357525 2001 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
COL5A1P20908 HMGB4-204ENST00000522796 2505 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.39
COL5A1P20908 SLC25A24-202ENST00000370041 3404 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
COL5A1P20908 AL359396.1-201ENST00000623151 2376 ntBASIC6.39□□□□□ -1.39
COL5A1P20908 GABRR1-203ENST00000454853 2820 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL5A1P20908 AC022075.1-201ENST00000500682 2830 ntTSL 2 BASIC6.39□□□□□ -1.39
COL5A1P20908 DTHD1-201ENST00000357504 3203 ntTSL 2 BASIC6.39□□□□□ -1.39
COL5A1P20908 STIL-203ENST00000371877 5009 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL5A1P20908 TLK2-214ENST00000582809 3608 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL5A1P20908 TEX11-202ENST00000374320 2224 ntTSL 2 BASIC6.39□□□□□ -1.39
COL5A1P20908 SLC11A2-201ENST00000262051 3986 ntAPPRIS ALT1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL5A1P20908 EIF4E2-207ENST00000409514 3525 ntTSL 5 BASIC6.39□□□□□ -1.39
COL5A1P20908 GPN1-203ENST00000424214 1725 ntTSL 2 BASIC6.39□□□□□ -1.39
COL5A1P20908 LACRT-201ENST00000257867 551 ntAPPRIS P2 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL5A1P20908 OR4F17-201ENST00000318050 1054 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
COL5A1P20908 OR4F4-201ENST00000326183 1054 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
COL5A1P20908 Z93019.1-201ENST00000416450 973 ntBASIC6.39□□□□□ -1.39
COL5A1P20908 HMGB1P7-201ENST00000450921 612 ntBASIC6.39□□□□□ -1.39
COL5A1P20908 AL049650.1-201ENST00000461548 823 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
COL5A1P20908 AC108103.1-201ENST00000511286 446 ntBASIC6.39□□□□□ -1.39
COL5A1P20908 AC119044.1-202ENST00000548463 339 ntTSL 2 BASIC6.39□□□□□ -1.39
COL5A1P20908 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC6.39□□□□□ -1.39
COL5A1P20908 AL662797.2-201ENST00000607333 527 ntTSL 2 BASIC6.39□□□□□ -1.39
COL5A1P20908 ERC1-202ENST00000355446 5796 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL5A1P20908 LINC00320-204ENST00000437238 2004 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL5A1P20908 SP110-201ENST00000258381 2426 ntAPPRIS P4 TSL 2 BASIC6.39□□□□□ -1.39
COL5A1P20908 GRIK2-207ENST00000421544 4789 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL5A1P20908 ADGRG7-201ENST00000273352 3140 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL5A1P20908 AL355306.2-201ENST00000635570 1542 ntTSL 5 BASIC6.39□□□□□ -1.39
COL5A1P20908 ZNF812P-202ENST00000536819 1890 ntTSL 2 BASIC6.39□□□□□ -1.39
COL5A1P20908 CABYR-216ENST00000621648 2226 ntAPPRIS P4 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL5A1P20908 POT1-201ENST00000357628 4080 ntAPPRIS P1 TSL 2 BASIC6.39□□□□□ -1.39
COL5A1P20908 TMCC3-203ENST00000551457 4361 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL5A1P20908 SENP8-201ENST00000340912 4281 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL5A1P20908 AC083864.3-202ENST00000570271 1755 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL5A1P20908 ZNF841-201ENST00000389534 3503 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL5A1P20908 AC091544.5-201ENST00000620192 3815 ntBASIC6.39□□□□□ -1.39
COL5A1P20908 B3GNT2-202ENST00000405767 2436 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL5A1P20908 DAZ1-202ENST00000405239 4421 ntAPPRIS P5 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL5A1P20908 ZBED3-AS1-216ENST00000515356 1987 ntTSL 2 BASIC6.39□□□□□ -1.39
COL5A1P20908 ZFYVE9-204ENST00000371591 4874 ntAPPRIS P4 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL5A1P20908 CLNK-204ENST00000515667 4180 ntAPPRIS ALT2 TSL 3 BASIC6.39□□□□□ -1.39
COL5A1P20908 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL5A1P20908 SPATA9-201ENST00000274432 1100 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL5A1P20908 GSTA5-201ENST00000284562 845 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
COL5A1P20908 IPPKP1-201ENST00000422501 768 ntBASIC6.39□□□□□ -1.39
COL5A1P20908 AC245047.1-201ENST00000433276 873 ntBASIC6.39□□□□□ -1.39
COL5A1P20908 AC068759.1-201ENST00000447709 470 ntTSL 5 BASIC6.39□□□□□ -1.39
COL5A1P20908 AL162427.1-201ENST00000450399 439 ntTSL 5 BASIC6.39□□□□□ -1.39
COL5A1P20908 OR13C1P-201ENST00000457612 963 ntBASIC6.39□□□□□ -1.39
COL5A1P20908 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
COL5A1P20908 RPL5P11-201ENST00000498068 893 ntBASIC6.39□□□□□ -1.39
COL5A1P20908 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC6.39□□□□□ -1.39
COL5A1P20908 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC6.39□□□□□ -1.39
COL5A1P20908 AC103740.1-202ENST00000558404 542 ntTSL 4 BASIC6.39□□□□□ -1.39
COL5A1P20908 AC004232.1-201ENST00000571388 208 ntBASIC6.39□□□□□ -1.39
COL5A1P20908 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC6.39□□□□□ -1.39
COL5A1P20908 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC6.39□□□□□ -1.39
COL5A1P20908 AL080312.2-201ENST00000613001 630 ntBASIC6.39□□□□□ -1.39
COL5A1P20908 AP000577.1-201ENST00000624366 878 ntBASIC6.39□□□□□ -1.39
COL5A1P20908 DRG1-207ENST00000629688 309 ntTSL 5 BASIC6.39□□□□□ -1.39
COL5A1P20908 SERPINB8-208ENST00000542677 3192 ntTSL 2 BASIC6.39□□□□□ -1.39
COL5A1P20908 UBE2V1-201ENST00000340309 2536 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL5A1P20908 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC6.39□□□□□ -1.39
COL5A1P20908 CHD8-213ENST00000557364 8137 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
COL5A1P20908 MYCBP2-212ENST00000612956 1542 ntTSL 5 BASIC6.38□□□□□ -1.39
COL5A1P20908 CASP12-212ENST00000613512 1451 ntAPPRIS P5 TSL 1 (best) BASIC6.38□□□□□ -1.39
COL5A1P20908 NBPF26-206ENST00000617913 2931 ntTSL 5 BASIC6.38□□□□□ -1.39
COL5A1P20908 FAM13C-216ENST00000618427 3458 ntAPPRIS ALT2 TSL 2 BASIC6.38□□□□□ -1.39
COL5A1P20908 AC131392.2-201ENST00000505635 4332 ntBASIC6.38□□□□□ -1.39
COL5A1P20908 NEDD4L-207ENST00000435432 3417 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL5A1P20908 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
COL5A1P20908 AL034417.4-202ENST00000642135 2236 ntBASIC6.38□□□□□ -1.39
COL5A1P20908 AC084816.1-210ENST00000540895 1920 ntTSL 2 BASIC6.38□□□□□ -1.39
COL5A1P20908 TANC1-201ENST00000263635 7470 ntAPPRIS P1 TSL 5 BASIC6.38□□□□□ -1.39
COL5A1P20908 MTRNR2L8-201ENST00000536684 1303 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
COL5A1P20908 FAR2P1-201ENST00000325390 3679 ntTSL 5 BASIC6.38□□□□□ -1.39
COL5A1P20908 TRIM66-202ENST00000402157 10086 ntAPPRIS P5 TSL 5 BASIC6.38□□□□□ -1.39
COL5A1P20908 RBM41-202ENST00000372487 2579 ntAPPRIS ALT1 TSL 2 BASIC6.38□□□□□ -1.39
COL5A1P20908 ENAH-209ENST00000635051 3308 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
COL5A1P20908 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 95.1 ms