Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC078788.2-201ENST00000462300 382 ntTSL 3 BASIC7.8□□□□□ -1.16
MSX1P28360 AC010655.2-201ENST00000493710 662 ntTSL 3 BASIC7.8□□□□□ -1.16
MSX1P28360 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
MSX1P28360 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
MSX1P28360 MAST4-IT1-201ENST00000514241 658 ntBASIC7.8□□□□□ -1.16
MSX1P28360 AC105345.2-201ENST00000515186 664 ntTSL 3 BASIC7.8□□□□□ -1.16
MSX1P28360 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC7.8□□□□□ -1.16
MSX1P28360 AC103831.1-201ENST00000522228 422 ntTSL 3 BASIC7.8□□□□□ -1.16
MSX1P28360 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC7.8□□□□□ -1.16
MSX1P28360 CCDC32-212ENST00000560305 557 ntTSL 4 BASIC7.8□□□□□ -1.16
MSX1P28360 AC063923.2-201ENST00000562158 928 ntBASIC7.8□□□□□ -1.16
MSX1P28360 MIR5008-201ENST00000584300 94 ntBASIC7.8□□□□□ -1.16
MSX1P28360 AC005379.1-201ENST00000585647 328 ntTSL 2 BASIC7.8□□□□□ -1.16
MSX1P28360 AC092681.3-201ENST00000609463 678 ntBASIC7.8□□□□□ -1.16
MSX1P28360 Metazoa_SRP.29-201ENST00000616220 280 ntBASIC7.8□□□□□ -1.16
MSX1P28360 Metazoa_SRP.192-201ENST00000616260 286 ntBASIC7.8□□□□□ -1.16
MSX1P28360 MIR7156-201ENST00000620979 60 ntBASIC7.8□□□□□ -1.16
MSX1P28360 AC022509.4-201ENST00000621404 572 ntBASIC7.8□□□□□ -1.16
MSX1P28360 Metazoa_SRP.106-201ENST00000622471 296 ntBASIC7.8□□□□□ -1.16
MSX1P28360 AP002505.2-201ENST00000623585 696 ntBASIC7.8□□□□□ -1.16
MSX1P28360 AC069542.2-201ENST00000624816 216 ntBASIC7.8□□□□□ -1.16
MSX1P28360 TEX41-256ENST00000626411 368 ntTSL 5 BASIC7.8□□□□□ -1.16
MSX1P28360 AC093495.1-212ENST00000630173 1162 ntTSL 5 BASIC7.8□□□□□ -1.16
MSX1P28360 SMG7-216ENST00000638826 219 ntTSL 2 BASIC7.8□□□□□ -1.16
MSX1P28360 OR13D1-202ENST00000641530 945 ntAPPRIS P1 BASIC7.8□□□□□ -1.16
MSX1P28360 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC7.8□□□□□ -1.16
MSX1P28360 CTNND1-203ENST00000361391 6232 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
MSX1P28360 CTNND1-204ENST00000361796 6226 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
MSX1P28360 SH3D19-202ENST00000409252 4888 ntAPPRIS P3 TSL 5 BASIC7.8□□□□□ -1.16
MSX1P28360 ZNF19-210ENST00000567225 2838 ntTSL 3 BASIC7.8□□□□□ -1.16
MSX1P28360 XRCC5-202ENST00000392133 3761 ntAPPRIS P1 TSL 5 BASIC7.8□□□□□ -1.16
MSX1P28360 COPS3-203ENST00000439936 1394 ntTSL 5 BASIC7.8□□□□□ -1.16
MSX1P28360 PRICKLE2-201ENST00000295902 7918 ntAPPRIS ALT2 TSL 5 BASIC7.8□□□□□ -1.16
MSX1P28360 UTY-209ENST00000537580 6490 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
MSX1P28360 THADA-205ENST00000404790 3043 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
MSX1P28360 KIAA1143-201ENST00000296121 5122 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
MSX1P28360 RYBP-201ENST00000477973 7215 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
MSX1P28360 SCN9A-201ENST00000303354 9786 ntAPPRIS ALT1 TSL 5 BASIC7.8□□□□□ -1.16
MSX1P28360 STON2-201ENST00000267540 2977 ntAPPRIS P3 TSL 1 (best) BASIC7.8□□□□□ -1.16
MSX1P28360 ZNF85-202ENST00000328178 2296 ntAPPRIS P2 TSL 1 (best) BASIC7.8□□□□□ -1.16
MSX1P28360 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC7.8□□□□□ -1.16
MSX1P28360 TMEM52B-203ENST00000381923 2601 ntAPPRIS ALT2 TSL 5 BASIC7.8□□□□□ -1.16
MSX1P28360 LINC02099-202ENST00000522158 2980 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
MSX1P28360 PIK3C3-204ENST00000586545 1554 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
MSX1P28360 AL137145.2-201ENST00000399868 3086 ntTSL 2 BASIC7.8□□□□□ -1.16
MSX1P28360 ZNF3-207ENST00000424697 2718 ntAPPRIS P1 TSL 3 BASIC7.8□□□□□ -1.16
MSX1P28360 ZSWIM5P3-201ENST00000511265 2743 ntBASIC7.8□□□□□ -1.16
MSX1P28360 FCGR3B-201ENST00000294800 2385 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
MSX1P28360 SERPINA1-208ENST00000448921 3532 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
MSX1P28360 SPTLC3-201ENST00000399002 6169 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
MSX1P28360 RTP3-201ENST00000296142 1321 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
MSX1P28360 ALKBH8-202ENST00000389568 2491 ntAPPRIS P3 TSL 5 BASIC7.79□□□□□ -1.16
MSX1P28360 ADGRF1-201ENST00000283297 2142 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
MSX1P28360 HBS1L-205ENST00000367837 7163 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
MSX1P28360 EYA4-203ENST00000367895 5699 ntAPPRIS P3 TSL 1 (best) BASIC7.79□□□□□ -1.16
MSX1P28360 AC092681.2-201ENST00000565102 3044 ntTSL 2 BASIC7.79□□□□□ -1.16
MSX1P28360 HGF-209ENST00000457544 2249 ntAPPRIS ALT1 TSL 1 (best) BASIC7.79□□□□□ -1.16
MSX1P28360 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC7.79□□□□□ -1.16
MSX1P28360 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC7.79□□□□□ -1.16
MSX1P28360 RBBP5-202ENST00000367164 4290 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
MSX1P28360 PWRN1-212ENST00000569908 1435 ntBASIC7.79□□□□□ -1.16
MSX1P28360 RASA2-201ENST00000286364 5614 ntAPPRIS P2 TSL 1 (best) BASIC7.79□□□□□ -1.16
MSX1P28360 SKAP1-201ENST00000336915 1534 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
MSX1P28360 SCYL3-202ENST00000367771 6364 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
MSX1P28360 ELK3-201ENST00000228741 4205 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
MSX1P28360 GGCX-201ENST00000233838 7569 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
MSX1P28360 WISP3-202ENST00000361714 2512 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
MSX1P28360 SUB1-201ENST00000265073 3507 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
MSX1P28360 KPNB1-202ENST00000535458 3163 ntTSL 2 BASIC7.79□□□□□ -1.16
MSX1P28360 CBX3P1-201ENST00000325243 554 ntBASIC7.79□□□□□ -1.16
MSX1P28360 FUNDC2P3-201ENST00000334716 533 ntBASIC7.79□□□□□ -1.16
MSX1P28360 RNU4-12P-201ENST00000365233 139 ntBASIC7.79□□□□□ -1.16
MSX1P28360 FETUB-202ENST00000382134 1055 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
MSX1P28360 RNU6-692P-201ENST00000384496 107 ntBASIC7.79□□□□□ -1.16
MSX1P28360 RNU6-253P-201ENST00000384730 105 ntBASIC7.79□□□□□ -1.16
MSX1P28360 RAB5CP1-201ENST00000395972 580 ntBASIC7.79□□□□□ -1.16
MSX1P28360 RN7SKP168-201ENST00000410910 300 ntBASIC7.79□□□□□ -1.16
MSX1P28360 RN7SKP136-201ENST00000410927 300 ntBASIC7.79□□□□□ -1.16
MSX1P28360 AC235097.1-201ENST00000412163 681 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
MSX1P28360 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC7.79□□□□□ -1.16
MSX1P28360 RPS15AP38-201ENST00000413110 372 ntBASIC7.79□□□□□ -1.16
MSX1P28360 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC7.79□□□□□ -1.16
MSX1P28360 MEAF6P1-201ENST00000416092 327 ntBASIC7.79□□□□□ -1.16
MSX1P28360 AL390840.1-201ENST00000420303 988 ntBASIC7.79□□□□□ -1.16
MSX1P28360 RPL21P43-201ENST00000425440 472 ntBASIC7.79□□□□□ -1.16
MSX1P28360 LINC01049-201ENST00000426840 742 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
MSX1P28360 AC073342.1-201ENST00000427392 592 ntTSL 5 BASIC7.79□□□□□ -1.16
MSX1P28360 CLYBL-AS2-201ENST00000430125 695 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
MSX1P28360 RPL3P8-201ENST00000432928 1191 ntBASIC7.79□□□□□ -1.16
MSX1P28360 ATP5F1P1-201ENST00000433775 569 ntBASIC7.79□□□□□ -1.16
MSX1P28360 AL441963.1-201ENST00000435137 792 ntBASIC7.79□□□□□ -1.16
MSX1P28360 AC112493.1-202ENST00000436019 673 ntTSL 3 BASIC7.79□□□□□ -1.16
MSX1P28360 CICP10-201ENST00000439497 198 ntBASIC7.79□□□□□ -1.16
MSX1P28360 AP000474.1-201ENST00000441465 680 ntTSL 3 BASIC7.79□□□□□ -1.16
MSX1P28360 AL772284.1-201ENST00000443421 905 ntBASIC7.79□□□□□ -1.16
MSX1P28360 AC242426.2-201ENST00000446956 795 ntBASIC7.79□□□□□ -1.16
MSX1P28360 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC7.79□□□□□ -1.16
MSX1P28360 RAB28P3-201ENST00000448325 597 ntBASIC7.79□□□□□ -1.16
MSX1P28360 NFU1P2-201ENST00000448700 469 ntBASIC7.79□□□□□ -1.16
MSX1P28360 AL139350.1-201ENST00000448825 408 ntTSL 3 BASIC7.79□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 63.4 ms