Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 LINC01320-206ENST00000607437 528 ntTSL 5 BASIC7.25□□□□□ -1.25
USP39Q53GS9 AC093783.1-201ENST00000612976 329 ntBASIC7.25□□□□□ -1.25
USP39Q53GS9 AL121809.2-201ENST00000613169 341 ntBASIC7.25□□□□□ -1.25
USP39Q53GS9 GAPDHP41-201ENST00000613707 975 ntBASIC7.25□□□□□ -1.25
USP39Q53GS9 AC211486.4-201ENST00000621495 113 ntBASIC7.25□□□□□ -1.25
USP39Q53GS9 AC135068.4-201ENST00000622949 925 ntBASIC7.25□□□□□ -1.25
USP39Q53GS9 CU638689.4-205ENST00000623313 596 ntTSL 4 BASIC7.25□□□□□ -1.25
USP39Q53GS9 AL162377.2-201ENST00000624532 337 ntBASIC7.25□□□□□ -1.25
USP39Q53GS9 ASAH1-224ENST00000636269 685 ntTSL 3 BASIC7.25□□□□□ -1.25
USP39Q53GS9 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC7.25□□□□□ -1.25
USP39Q53GS9 BDNF-207ENST00000395986 3979 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
USP39Q53GS9 APOL3-203ENST00000397287 3626 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
USP39Q53GS9 ZC3H8-202ENST00000409573 5965 ntAPPRIS P2 TSL 5 BASIC7.25□□□□□ -1.25
USP39Q53GS9 PRLR-212ENST00000513753 1525 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
USP39Q53GS9 RAPGEF5-201ENST00000344041 6621 ntAPPRIS P1 TSL 5 BASIC7.25□□□□□ -1.25
USP39Q53GS9 LIN7C-202ENST00000524596 4290 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
USP39Q53GS9 APOOL-202ENST00000613473 6445 ntAPPRIS ALT1 TSL 5 BASIC7.25□□□□□ -1.25
USP39Q53GS9 CACNB4-219ENST00000636108 1698 ntTSL 5 BASIC7.25□□□□□ -1.25
USP39Q53GS9 LINC00184-201ENST00000429269 2270 ntTSL 2 BASIC7.25□□□□□ -1.25
USP39Q53GS9 EBF1-203ENST00000517373 2277 ntTSL 5 BASIC7.25□□□□□ -1.25
USP39Q53GS9 AL591379.1-201ENST00000315293 3739 ntTSL 2 BASIC7.25□□□□□ -1.25
USP39Q53GS9 PKIB-211ENST00000615438 1936 ntTSL 5 BASIC7.25□□□□□ -1.25
USP39Q53GS9 SOX6-201ENST00000316399 8808 ntAPPRIS P3 TSL 5 BASIC7.25□□□□□ -1.25
USP39Q53GS9 CENPN-203ENST00000393335 1556 ntTSL 2 BASIC7.25□□□□□ -1.25
USP39Q53GS9 CHD2-208ENST00000626874 7764 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
USP39Q53GS9 SORBS1-219ENST00000607232 4374 ntAPPRIS ALT2 TSL 5 BASIC7.24□□□□□ -1.25
USP39Q53GS9 DAZ1-203ENST00000426000 1846 ntTSL 5 BASIC7.24□□□□□ -1.25
USP39Q53GS9 RAG1-201ENST00000299440 6564 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
USP39Q53GS9 AL359551.1-201ENST00000442726 2900 ntTSL 2 BASIC7.24□□□□□ -1.25
USP39Q53GS9 CEP85-201ENST00000252992 3935 ntAPPRIS P3 TSL 1 (best) BASIC7.24□□□□□ -1.25
USP39Q53GS9 ZSCAN4-202ENST00000612521 1979 ntAPPRIS P1 TSL 5 BASIC7.24□□□□□ -1.25
USP39Q53GS9 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
USP39Q53GS9 ZNF407-202ENST00000309902 5595 ntTSL 2 BASIC7.24□□□□□ -1.25
USP39Q53GS9 AGO1-202ENST00000373206 3996 ntTSL 2 BASIC7.24□□□□□ -1.25
USP39Q53GS9 CXCR2-201ENST00000318507 2879 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
USP39Q53GS9 AJ009632.1-201ENST00000433588 1376 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
USP39Q53GS9 AL450426.1-201ENST00000635678 1602 ntTSL 5 BASIC7.24□□□□□ -1.25
USP39Q53GS9 FAM135A-207ENST00000457062 5282 ntAPPRIS P3 TSL 1 (best) BASIC7.24□□□□□ -1.25
USP39Q53GS9 ZMYND11-204ENST00000381604 4066 ntTSL 5 BASIC7.24□□□□□ -1.25
USP39Q53GS9 ZNF66-202ENST00000360204 1120 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
USP39Q53GS9 NALCN-202ENST00000376200 1126 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
USP39Q53GS9 OR51B4-201ENST00000380224 933 ntAPPRIS P1 BASIC7.24□□□□□ -1.25
USP39Q53GS9 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC7.24□□□□□ -1.25
USP39Q53GS9 CEACAM1-208ENST00000403461 1263 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
USP39Q53GS9 AL138828.1-204ENST00000413745 898 ntTSL 5 BASIC7.24□□□□□ -1.25
USP39Q53GS9 AL162582.1-201ENST00000419196 467 ntTSL 3 BASIC7.24□□□□□ -1.25
USP39Q53GS9 LINC01058-201ENST00000420694 448 ntTSL 5 BASIC7.24□□□□□ -1.25
USP39Q53GS9 AC015923.1-201ENST00000435892 305 ntTSL 2 BASIC7.24□□□□□ -1.25
USP39Q53GS9 LINC00328-2P-201ENST00000436585 219 ntBASIC7.24□□□□□ -1.25
USP39Q53GS9 MTND4P15-201ENST00000437913 1033 ntBASIC7.24□□□□□ -1.25
USP39Q53GS9 LINC01681-201ENST00000439184 760 ntTSL 2 BASIC7.24□□□□□ -1.25
USP39Q53GS9 AL445991.1-201ENST00000450381 475 ntBASIC7.24□□□□□ -1.25
USP39Q53GS9 AL034369.1-201ENST00000453808 477 ntBASIC7.24□□□□□ -1.25
USP39Q53GS9 AGKP1-201ENST00000455254 1263 ntBASIC7.24□□□□□ -1.25
USP39Q53GS9 AC011005.4-201ENST00000466717 535 ntTSL 3 BASIC7.24□□□□□ -1.25
USP39Q53GS9 GLRXP3-201ENST00000470810 321 ntBASIC7.24□□□□□ -1.25
USP39Q53GS9 AP003385.3-201ENST00000472498 287 ntBASIC7.24□□□□□ -1.25
USP39Q53GS9 AC009567.2-201ENST00000502989 349 ntBASIC7.24□□□□□ -1.25
USP39Q53GS9 AC104078.2-201ENST00000504344 541 ntTSL 5 BASIC7.24□□□□□ -1.25
USP39Q53GS9 SSX8-201ENST00000506270 579 ntBASIC7.24□□□□□ -1.25
USP39Q53GS9 AC004063.1-201ENST00000508358 547 ntTSL 4 BASIC7.24□□□□□ -1.25
USP39Q53GS9 GCSHP1-201ENST00000512554 484 ntBASIC7.24□□□□□ -1.25
USP39Q53GS9 AC092435.1-202ENST00000512752 518 ntTSL 3 BASIC7.24□□□□□ -1.25
USP39Q53GS9 AC023866.2-201ENST00000521378 387 ntTSL 3 BASIC7.24□□□□□ -1.25
USP39Q53GS9 AC138701.1-201ENST00000524329 714 ntBASIC7.24□□□□□ -1.25
USP39Q53GS9 AP003100.1-201ENST00000524772 832 ntTSL 3 BASIC7.24□□□□□ -1.25
USP39Q53GS9 AL121594.4-201ENST00000556211 1196 ntBASIC7.24□□□□□ -1.25
USP39Q53GS9 AC023908.2-201ENST00000558616 318 ntTSL 3 BASIC7.24□□□□□ -1.25
USP39Q53GS9 AC146944.4-201ENST00000602697 718 ntBASIC7.24□□□□□ -1.25
USP39Q53GS9 AL157392.4-201ENST00000609756 345 ntBASIC7.24□□□□□ -1.25
USP39Q53GS9 Six3os1_2.1-201ENST00000616963 217 ntBASIC7.24□□□□□ -1.25
USP39Q53GS9 AL161420.1-201ENST00000619393 264 ntBASIC7.24□□□□□ -1.25
USP39Q53GS9 TEX41-293ENST00000630451 690 ntTSL 5 BASIC7.24□□□□□ -1.25
USP39Q53GS9 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC7.24□□□□□ -1.25
USP39Q53GS9 AL022393.1-201ENST00000625142 1677 ntBASIC7.24□□□□□ -1.25
USP39Q53GS9 OR7D2-201ENST00000344248 3224 ntAPPRIS P1 BASIC7.24□□□□□ -1.25
USP39Q53GS9 TTC26-203ENST00000464848 4299 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
USP39Q53GS9 AC244502.1-201ENST00000514473 1951 ntTSL 2 BASIC7.24□□□□□ -1.25
USP39Q53GS9 SUPT7L-202ENST00000404798 4114 ntTSL 2 BASIC7.24□□□□□ -1.25
USP39Q53GS9 LINC00861-201ENST00000500989 5330 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
USP39Q53GS9 ZFP37-201ENST00000374227 6266 ntAPPRIS P3 TSL 1 (best) BASIC7.24□□□□□ -1.25
USP39Q53GS9 UNC13B-209ENST00000635942 14550 ntAPPRIS ALT2 TSL 5 BASIC7.23□□□□□ -1.25
USP39Q53GS9 ZFX-201ENST00000304543 2996 ntAPPRIS P1 TSL 5 BASIC7.23□□□□□ -1.25
USP39Q53GS9 TMX2-201ENST00000278422 1631 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
USP39Q53GS9 SATL1-201ENST00000395409 2192 ntAPPRIS P1 TSL 5 BASIC7.23□□□□□ -1.25
USP39Q53GS9 CDH18-210ENST00000511273 2318 ntTSL 5 BASIC7.23□□□□□ -1.25
USP39Q53GS9 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
USP39Q53GS9 DLG2-209ENST00000418306 3027 ntTSL 2 BASIC7.23□□□□□ -1.25
USP39Q53GS9 AC091806.1-201ENST00000452690 3000 ntTSL 2 BASIC7.23□□□□□ -1.25
USP39Q53GS9 C8orf34-208ENST00000523686 1948 ntAPPRIS ALT2 TSL 2 BASIC7.23□□□□□ -1.25
USP39Q53GS9 CNTNAP4-206ENST00000478060 3708 ntTSL 5 BASIC7.23□□□□□ -1.25
USP39Q53GS9 HSPA8P19-201ENST00000505359 1517 ntBASIC7.23□□□□□ -1.25
USP39Q53GS9 AC011592.1-201ENST00000624647 3634 ntBASIC7.23□□□□□ -1.25
USP39Q53GS9 SEMA5A-AS1-201ENST00000510879 1679 ntTSL 2 BASIC7.23□□□□□ -1.25
USP39Q53GS9 SORBS1-205ENST00000371227 7279 ntAPPRIS ALT2 TSL 1 (best) BASIC7.23□□□□□ -1.25
USP39Q53GS9 TEX14-203ENST00000389934 4927 ntAPPRIS P4 TSL 1 (best) BASIC7.23□□□□□ -1.25
USP39Q53GS9 SCIN-209ENST00000519209 2660 ntTSL 2 BASIC7.23□□□□□ -1.25
USP39Q53GS9 OR2AG2-202ENST00000641124 4224 ntAPPRIS P1 BASIC7.23□□□□□ -1.25
USP39Q53GS9 OR2AG2-203ENST00000641169 4221 ntAPPRIS P1 BASIC7.23□□□□□ -1.25
USP39Q53GS9 NHEJ1-202ENST00000409720 1954 ntTSL 5 BASIC7.23□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 70.2 ms