Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 LINC01260-201ENST00000415889 1416 ntTSL 5 BASIC7.81□□□□□ -1.16
MSX1P28360 OR4D1-201ENST00000268912 1024 ntAPPRIS P1 BASIC7.81□□□□□ -1.16
MSX1P28360 DEFB104A-201ENST00000314265 281 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
MSX1P28360 DEFB104B-201ENST00000316169 281 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
MSX1P28360 ABCB4-202ENST00000358400 3826 ntTSL 5 BASIC7.81□□□□□ -1.16
MSX1P28360 RN7SKP239-201ENST00000364814 295 ntBASIC7.81□□□□□ -1.16
MSX1P28360 TMEM244-201ENST00000368143 545 ntAPPRIS P1 TSL 2 BASIC7.81□□□□□ -1.16
MSX1P28360 COX7A2-201ENST00000370081 914 ntAPPRIS P2 TSL 3 BASIC7.81□□□□□ -1.16
MSX1P28360 EEF1AKMT1-202ENST00000382758 1042 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
MSX1P28360 TRBV5-1-201ENST00000390381 652 ntAPPRIS P1 BASIC7.81□□□□□ -1.16
MSX1P28360 GSTA12P-201ENST00000402398 508 ntBASIC7.81□□□□□ -1.16
MSX1P28360 ARF1P1-201ENST00000406466 544 ntBASIC7.81□□□□□ -1.16
MSX1P28360 AC006457.1-201ENST00000420733 392 ntBASIC7.81□□□□□ -1.16
MSX1P28360 GLRXP1-201ENST00000423261 334 ntBASIC7.81□□□□□ -1.16
MSX1P28360 SATB1-AS1-202ENST00000425799 611 ntTSL 5 BASIC7.81□□□□□ -1.16
MSX1P28360 KDM4A-AS1-203ENST00000434346 833 ntTSL 5 BASIC7.81□□□□□ -1.16
MSX1P28360 AL117338.1-201ENST00000434552 631 ntTSL 5 BASIC7.81□□□□□ -1.16
MSX1P28360 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC7.81□□□□□ -1.16
MSX1P28360 MTATP6P30-201ENST00000443540 664 ntBASIC7.81□□□□□ -1.16
MSX1P28360 IFNWP5-201ENST00000445100 588 ntBASIC7.81□□□□□ -1.16
MSX1P28360 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC7.81□□□□□ -1.16
MSX1P28360 NANOGNBP1-201ENST00000448444 480 ntBASIC7.81□□□□□ -1.16
MSX1P28360 LYPD6B-207ENST00000450639 484 ntAPPRIS ALT2 TSL 3 BASIC7.81□□□□□ -1.16
MSX1P28360 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC7.81□□□□□ -1.16
MSX1P28360 GAPDHP28-201ENST00000455134 1003 ntBASIC7.81□□□□□ -1.16
MSX1P28360 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC7.81□□□□□ -1.16
MSX1P28360 GCSAM-202ENST00000460387 623 ntTSL 3 BASIC7.81□□□□□ -1.16
MSX1P28360 AP000852.1-201ENST00000472460 573 ntBASIC7.81□□□□□ -1.16
MSX1P28360 RN7SL621P-201ENST00000472565 299 ntBASIC7.81□□□□□ -1.16
MSX1P28360 AC147055.4-201ENST00000504399 745 ntBASIC7.81□□□□□ -1.16
MSX1P28360 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC7.81□□□□□ -1.16
MSX1P28360 AC090071.1-201ENST00000507713 644 ntBASIC7.81□□□□□ -1.16
MSX1P28360 TMEM150C-203ENST00000508701 566 ntTSL 4 BASIC7.81□□□□□ -1.16
MSX1P28360 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
MSX1P28360 SNORA20.3-201ENST00000516880 132 ntBASIC7.81□□□□□ -1.16
MSX1P28360 AP006587.2-201ENST00000530696 493 ntBASIC7.81□□□□□ -1.16
MSX1P28360 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC7.81□□□□□ -1.16
MSX1P28360 OR11J2P-201ENST00000555298 907 ntBASIC7.81□□□□□ -1.16
MSX1P28360 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC7.81□□□□□ -1.16
MSX1P28360 AC140658.1-201ENST00000563019 346 ntTSL 5 BASIC7.81□□□□□ -1.16
MSX1P28360 PWRN1-206ENST00000565512 433 ntTSL 2 BASIC7.81□□□□□ -1.16
MSX1P28360 CCDC58P1-201ENST00000578567 430 ntBASIC7.81□□□□□ -1.16
MSX1P28360 AC021506.1-201ENST00000581971 597 ntTSL 5 BASIC7.81□□□□□ -1.16
MSX1P28360 AC004257.1-201ENST00000593588 277 ntTSL 5 BASIC7.81□□□□□ -1.16
MSX1P28360 AC097534.2-201ENST00000609153 751 ntTSL 3 BASIC7.81□□□□□ -1.16
MSX1P28360 Metazoa_SRP.71-201ENST00000612122 282 ntBASIC7.81□□□□□ -1.16
MSX1P28360 AL136221.1-201ENST00000621449 509 ntBASIC7.81□□□□□ -1.16
MSX1P28360 LINC01727-204ENST00000624385 940 ntTSL 5 BASIC7.81□□□□□ -1.16
MSX1P28360 HAUS2-201ENST00000260372 3949 ntAPPRIS P1 TSL 1 (best) BASIC7.81□□□□□ -1.16
MSX1P28360 AC006210.2-201ENST00000367074 1545 ntBASIC7.81□□□□□ -1.16
MSX1P28360 TTTY25P-201ENST00000558356 1505 ntBASIC7.81□□□□□ -1.16
MSX1P28360 RTN4-206ENST00000394611 4161 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
MSX1P28360 CEP68-205ENST00000537589 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC7.81□□□□□ -1.16
MSX1P28360 COA1-203ENST00000395879 2448 ntAPPRIS P3 TSL 1 (best) BASIC7.81□□□□□ -1.16
MSX1P28360 LINC00410-201ENST00000419272 2018 ntTSL 2 BASIC7.81□□□□□ -1.16
MSX1P28360 SH3D19-204ENST00000427414 2656 ntAPPRIS ALT1 TSL 1 (best) BASIC7.81□□□□□ -1.16
MSX1P28360 PRDM10-205ENST00000526082 3308 ntTSL 1 (best) BASIC7.81□□□□□ -1.16
MSX1P28360 ZNF252P-201ENST00000426361 5210 ntTSL 4 BASIC7.81□□□□□ -1.16
MSX1P28360 KCNK2-201ENST00000391894 1491 ntAPPRIS P3 TSL 1 (best) BASIC7.81□□□□□ -1.16
MSX1P28360 CCNK-201ENST00000389879 3524 ntAPPRIS P1 TSL 5 BASIC7.81□□□□□ -1.16
MSX1P28360 XIST-206ENST00000434839 2865 ntTSL 5 BASIC7.81□□□□□ -1.16
MSX1P28360 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC7.81□□□□□ -1.16
MSX1P28360 LINC01725-205ENST00000457273 1991 ntTSL 2 BASIC7.8□□□□□ -1.16
MSX1P28360 AC092329.4-202ENST00000638174 1989 ntTSL 2 BASIC7.8□□□□□ -1.16
MSX1P28360 AC132825.4-201ENST00000582527 3644 ntBASIC7.8□□□□□ -1.16
MSX1P28360 TMEM59-204ENST00000371344 2473 ntTSL 2 BASIC7.8□□□□□ -1.16
MSX1P28360 MGAT5-202ENST00000409645 8252 ntAPPRIS P1 TSL 5 BASIC7.8□□□□□ -1.16
MSX1P28360 DYNC2LI1-210ENST00000605786 1346 ntAPPRIS ALT1 TSL 1 (best) BASIC7.8□□□□□ -1.16
MSX1P28360 LIG4-204ENST00000611712 4180 ntAPPRIS P1 TSL 4 BASIC7.8□□□□□ -1.16
MSX1P28360 MCM3-205ENST00000596288 3169 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
MSX1P28360 LY86-AS1-201ENST00000429345 1941 ntTSL 2 BASIC7.8□□□□□ -1.16
MSX1P28360 WDR44-203ENST00000371825 4029 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
MSX1P28360 MR1-205ENST00000434571 7479 ntTSL 5 BASIC7.8□□□□□ -1.16
MSX1P28360 ZNF441-201ENST00000357901 4356 ntAPPRIS P1 TSL 3 BASIC7.8□□□□□ -1.16
MSX1P28360 SPX-201ENST00000256969 2269 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
MSX1P28360 SERPINA9-202ENST00000337425 1755 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
MSX1P28360 ZKSCAN3-202ENST00000341464 1794 ntTSL 2 BASIC7.8□□□□□ -1.16
MSX1P28360 LACTB2-AS1-201ENST00000499227 3716 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
MSX1P28360 HHIP-201ENST00000296575 10072 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
MSX1P28360 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC7.8□□□□□ -1.16
MSX1P28360 NLRP9-201ENST00000332836 3484 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
MSX1P28360 LINC01856-201ENST00000450840 2398 ntTSL 2 BASIC7.8□□□□□ -1.16
MSX1P28360 SNRPD1-201ENST00000300413 4909 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
MSX1P28360 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
MSX1P28360 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC7.8□□□□□ -1.16
MSX1P28360 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
MSX1P28360 AL079342.2-201ENST00000403367 482 ntBASIC7.8□□□□□ -1.16
MSX1P28360 MIR1296-201ENST00000408136 92 ntBASIC7.8□□□□□ -1.16
MSX1P28360 AL022332.1-201ENST00000411511 428 ntTSL 5 BASIC7.8□□□□□ -1.16
MSX1P28360 RPL21P108-201ENST00000413857 481 ntBASIC7.8□□□□□ -1.16
MSX1P28360 TGFB2-AS1-201ENST00000414452 557 ntTSL 3 BASIC7.8□□□□□ -1.16
MSX1P28360 AL136231.1-201ENST00000429407 730 ntBASIC7.8□□□□□ -1.16
MSX1P28360 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC7.8□□□□□ -1.16
MSX1P28360 AL645568.1-202ENST00000437190 1016 ntTSL 5 BASIC7.8□□□□□ -1.16
MSX1P28360 USP9YP8-201ENST00000441913 500 ntBASIC7.8□□□□□ -1.16
MSX1P28360 TCEA1P3-201ENST00000443005 880 ntBASIC7.8□□□□□ -1.16
MSX1P28360 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
MSX1P28360 OR7E102P-201ENST00000448855 1015 ntBASIC7.8□□□□□ -1.16
MSX1P28360 OR5S1P-201ENST00000453063 951 ntBASIC7.8□□□□□ -1.16
MSX1P28360 AC239859.3-201ENST00000456469 408 ntTSL 5 BASIC7.8□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 95.2 ms