Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 BX005266.3-201ENST00000443013 1075 ntBASIC8.49□□□□□ -1.05
HMGB1P09429 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC8.49□□□□□ -1.05
HMGB1P09429 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC8.49□□□□□ -1.05
HMGB1P09429 SEC11A-202ENST00000455959 1223 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
HMGB1P09429 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC8.49□□□□□ -1.05
HMGB1P09429 AC021074.2-201ENST00000468434 172 ntBASIC8.49□□□□□ -1.05
HMGB1P09429 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC8.49□□□□□ -1.05
HMGB1P09429 PDPN-205ENST00000487038 607 ntTSL 2 BASIC8.49□□□□□ -1.05
HMGB1P09429 RN7SL306P-201ENST00000492941 296 ntBASIC8.49□□□□□ -1.05
HMGB1P09429 AC226119.1-201ENST00000514073 682 ntTSL 3 BASIC8.49□□□□□ -1.05
HMGB1P09429 AC022973.2-201ENST00000520146 549 ntTSL 4 BASIC8.49□□□□□ -1.05
HMGB1P09429 OR7E10P-201ENST00000526420 991 ntBASIC8.49□□□□□ -1.05
HMGB1P09429 AP001257.1-201ENST00000533106 385 ntTSL 3 BASIC8.49□□□□□ -1.05
HMGB1P09429 ETFBKMT-204ENST00000538391 1067 ntTSL 3 BASIC8.49□□□□□ -1.05
HMGB1P09429 AC116158.2-201ENST00000559544 553 ntTSL 4 BASIC8.49□□□□□ -1.05
HMGB1P09429 SEC11A-209ENST00000560266 1089 ntTSL 5 BASIC8.49□□□□□ -1.05
HMGB1P09429 AC068831.6-201ENST00000560522 795 ntTSL 3 BASIC8.49□□□□□ -1.05
HMGB1P09429 AC006441.4-202ENST00000577621 510 ntTSL 3 BASIC8.49□□□□□ -1.05
HMGB1P09429 AC105227.1-201ENST00000586227 438 ntTSL 5 BASIC8.49□□□□□ -1.05
HMGB1P09429 LINC00466-206ENST00000634576 1279 ntTSL 5 BASIC8.49□□□□□ -1.05
HMGB1P09429 AC099654.6-201ENST00000636487 512 ntBASIC8.49□□□□□ -1.05
HMGB1P09429 KAT6B-203ENST00000372714 5892 ntAPPRIS ALT2 TSL 5 BASIC8.49□□□□□ -1.05
HMGB1P09429 EZH1-222ENST00000592743 2501 ntAPPRIS P1 TSL 2 BASIC8.49□□□□□ -1.05
HMGB1P09429 PEAK1-202ENST00000558305 4644 ntTSL 4 BASIC8.49□□□□□ -1.05
HMGB1P09429 ARHGAP32-202ENST00000392657 6556 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
HMGB1P09429 RIF1-201ENST00000243326 15003 ntAPPRIS P3 TSL 1 (best) BASIC8.49□□□□□ -1.05
HMGB1P09429 SLC39A12-202ENST00000377371 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC8.49□□□□□ -1.05
HMGB1P09429 LARP1B-203ENST00000432347 2707 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
HMGB1P09429 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC8.49□□□□□ -1.05
HMGB1P09429 FGFR2-213ENST00000369061 3803 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
HMGB1P09429 MFSD8-217ENST00000641178 4374 ntBASIC8.49□□□□□ -1.05
HMGB1P09429 AL358913.2-201ENST00000553881 1548 ntBASIC8.49□□□□□ -1.05
HMGB1P09429 PPP2R3A-201ENST00000264977 6795 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
HMGB1P09429 PIGN-233ENST00000639342 4305 ntTSL 5 BASIC8.48□□□□□ -1.05
HMGB1P09429 MID1-205ENST00000380785 6092 ntAPPRIS P1 TSL 2 BASIC8.48□□□□□ -1.05
HMGB1P09429 ADGRL3-206ENST00000507164 4982 ntTSL 5 BASIC8.48□□□□□ -1.05
HMGB1P09429 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
HMGB1P09429 OR11G2-203ENST00000641879 4415 ntAPPRIS P1 BASIC8.48□□□□□ -1.05
HMGB1P09429 AC093752.1-213ENST00000503038 2376 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
HMGB1P09429 ABRAXAS2-201ENST00000298492 2992 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
HMGB1P09429 AL033543.1-201ENST00000623440 13454 ntBASIC8.48□□□□□ -1.05
HMGB1P09429 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC8.48□□□□□ -1.05
HMGB1P09429 RN7SKP107-201ENST00000364157 290 ntBASIC8.48□□□□□ -1.05
HMGB1P09429 RN7SKP1-201ENST00000365525 307 ntBASIC8.48□□□□□ -1.05
HMGB1P09429 RAET1G-201ENST00000367360 1107 ntAPPRIS P2 TSL 1 (best) BASIC8.48□□□□□ -1.05
HMGB1P09429 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC8.48□□□□□ -1.05
HMGB1P09429 AC009500.1-201ENST00000420684 583 ntBASIC8.48□□□□□ -1.05
HMGB1P09429 AL606804.1-201ENST00000435333 538 ntTSL 3 BASIC8.48□□□□□ -1.05
HMGB1P09429 AC008620.1-201ENST00000468453 592 ntBASIC8.48□□□□□ -1.05
HMGB1P09429 AK5-208ENST00000478255 556 ntTSL 2 BASIC8.48□□□□□ -1.05
HMGB1P09429 AC131233.1-201ENST00000479200 955 ntBASIC8.48□□□□□ -1.05
HMGB1P09429 RN7SL705P-201ENST00000481678 294 ntBASIC8.48□□□□□ -1.05
HMGB1P09429 LSAMP-AS1-201ENST00000490351 553 ntTSL 2 BASIC8.48□□□□□ -1.05
HMGB1P09429 PABPC1P1-201ENST00000506347 591 ntBASIC8.48□□□□□ -1.05
HMGB1P09429 AC092674.1-201ENST00000513871 571 ntTSL 4 BASIC8.48□□□□□ -1.05
HMGB1P09429 AC013546.1-201ENST00000523232 564 ntTSL 4 BASIC8.48□□□□□ -1.05
HMGB1P09429 DACT3-AS1-202ENST00000525008 496 ntTSL 2 BASIC8.48□□□□□ -1.05
HMGB1P09429 OR4V1P-201ENST00000525394 1140 ntBASIC8.48□□□□□ -1.05
HMGB1P09429 LINC00678-202ENST00000534757 798 ntTSL 3 BASIC8.48□□□□□ -1.05
HMGB1P09429 MAGOHB-204ENST00000539554 666 ntTSL 3 BASIC8.48□□□□□ -1.05
HMGB1P09429 AL358913.1-201ENST00000554342 121 ntBASIC8.48□□□□□ -1.05
HMGB1P09429 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC8.48□□□□□ -1.05
HMGB1P09429 LINC01582-201ENST00000560195 560 ntTSL 4 BASIC8.48□□□□□ -1.05
HMGB1P09429 NDUFA3P4-201ENST00000560814 250 ntBASIC8.48□□□□□ -1.05
HMGB1P09429 ULK4P3-201ENST00000563895 440 ntBASIC8.48□□□□□ -1.05
HMGB1P09429 ULK4P1-202ENST00000565174 503 ntBASIC8.48□□□□□ -1.05
HMGB1P09429 AC010463.3-201ENST00000594077 500 ntBASIC8.48□□□□□ -1.05
HMGB1P09429 LINC01320-205ENST00000604250 857 ntTSL 5 BASIC8.48□□□□□ -1.05
HMGB1P09429 LINC01396-201ENST00000609099 527 ntTSL 3 BASIC8.48□□□□□ -1.05
HMGB1P09429 AC130448.2-201ENST00000624082 374 ntBASIC8.48□□□□□ -1.05
HMGB1P09429 GOSR2-221ENST00000638892 3808 ntTSL 5 BASIC8.48□□□□□ -1.05
HMGB1P09429 AC114401.1-201ENST00000484222 2084 ntTSL 2 BASIC8.48□□□□□ -1.05
HMGB1P09429 GUCY1B2-203ENST00000493639 2871 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
HMGB1P09429 LINC02179-201ENST00000561523 3673 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
HMGB1P09429 LRFN5-203ENST00000554120 2121 ntAPPRIS ALT2 TSL 5 BASIC8.48□□□□□ -1.05
HMGB1P09429 GPN1-203ENST00000424214 1725 ntTSL 2 BASIC8.48□□□□□ -1.05
HMGB1P09429 KIF1B-204ENST00000377086 10669 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
HMGB1P09429 DNM1L-203ENST00000381000 4397 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
HMGB1P09429 PSEN1-201ENST00000324501 6078 ntAPPRIS P4 TSL 1 (best) BASIC8.48□□□□□ -1.05
HMGB1P09429 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
HMGB1P09429 SLC12A1-202ENST00000380993 4707 ntAPPRIS P3 TSL 5 BASIC8.48□□□□□ -1.05
HMGB1P09429 AL590542.1-201ENST00000449314 1596 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
HMGB1P09429 NEXMIF-203ENST00000616200 10624 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
HMGB1P09429 BTK-209ENST00000618050 2417 ntTSL 5 BASIC8.48□□□□□ -1.05
HMGB1P09429 BRINP3-201ENST00000367462 3142 ntAPPRIS P1 TSL 1 (best) BASIC8.47□□□□□ -1.05
HMGB1P09429 MFSD8-256ENST00000641949 1640 ntBASIC8.47□□□□□ -1.05
HMGB1P09429 RSC1A1-201ENST00000345034 1854 ntAPPRIS P1 BASIC8.47□□□□□ -1.05
HMGB1P09429 DDX60-201ENST00000393743 6071 ntAPPRIS P1 TSL 1 (best) BASIC8.47□□□□□ -1.05
HMGB1P09429 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC8.47□□□□□ -1.05
HMGB1P09429 AL671511.1-201ENST00000425033 3458 ntTSL 2 BASIC8.47□□□□□ -1.05
HMGB1P09429 ASAH1-267ENST00000637991 2399 ntTSL 5 BASIC8.47□□□□□ -1.05
HMGB1P09429 ABCD3-202ENST00000370214 3538 ntAPPRIS P1 TSL 1 (best) BASIC8.47□□□□□ -1.05
HMGB1P09429 SENP1-201ENST00000448372 4679 ntAPPRIS P2 TSL 1 (best) BASIC8.47□□□□□ -1.05
HMGB1P09429 PPWD1-201ENST00000261308 2166 ntAPPRIS P1 TSL 1 (best) BASIC8.47□□□□□ -1.05
HMGB1P09429 CCDC171-201ENST00000380701 6512 ntAPPRIS P1 TSL 1 (best) BASIC8.47□□□□□ -1.05
HMGB1P09429 IFT74-204ENST00000443698 2163 ntAPPRIS P1 TSL 5 BASIC8.47□□□□□ -1.05
HMGB1P09429 PPWD1-214ENST00000535264 2195 ntTSL 2 BASIC8.47□□□□□ -1.05
HMGB1P09429 AQP4-AS1-202ENST00000578701 2177 ntTSL 1 (best) BASIC8.47□□□□□ -1.05
HMGB1P09429 ERLIN2-201ENST00000276461 6073 ntAPPRIS P1 TSL 1 (best) BASIC8.47□□□□□ -1.05
HMGB1P09429 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC8.47□□□□□ -1.05
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms