Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RNU4ATAC2P-201ENST00000408674 126 ntBASIC6.06□□□□□ -1.44
NKX3-1Q99801 AC023469.1-201ENST00000409243 469 ntTSL 3 BASIC6.06□□□□□ -1.44
NKX3-1Q99801 PPIAP30-201ENST00000415473 519 ntBASIC6.06□□□□□ -1.44
NKX3-1Q99801 LINC01687-201ENST00000416327 795 ntTSL 3 BASIC6.06□□□□□ -1.44
NKX3-1Q99801 OR7E117P-201ENST00000422682 1112 ntBASIC6.06□□□□□ -1.44
NKX3-1Q99801 NPM1P30-201ENST00000425092 828 ntBASIC6.06□□□□□ -1.44
NKX3-1Q99801 OR1M1-201ENST00000429566 1035 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
NKX3-1Q99801 AC018467.1-202ENST00000432612 533 ntTSL 3 BASIC6.06□□□□□ -1.44
NKX3-1Q99801 AC091730.1-201ENST00000440455 692 ntTSL 3 BASIC6.06□□□□□ -1.44
NKX3-1Q99801 AC092941.2-201ENST00000444379 1008 ntTSL 3 BASIC6.06□□□□□ -1.44
NKX3-1Q99801 PGBD4P1-201ENST00000473644 407 ntBASIC6.06□□□□□ -1.44
NKX3-1Q99801 ROPN1B-207ENST00000511082 782 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
NKX3-1Q99801 AC093668.1-201ENST00000514917 911 ntAPPRIS P1 TSL 3 BASIC6.06□□□□□ -1.44
NKX3-1Q99801 VDAC3-206ENST00000521158 949 ntAPPRIS ALT1 TSL 5 BASIC6.06□□□□□ -1.44
NKX3-1Q99801 HNRNPCP8-201ENST00000528764 888 ntBASIC6.06□□□□□ -1.44
NKX3-1Q99801 SRSF5-209ENST00000555349 565 ntTSL 4 BASIC6.06□□□□□ -1.44
NKX3-1Q99801 DRAIC-206ENST00000559029 309 ntTSL 3 BASIC6.06□□□□□ -1.44
NKX3-1Q99801 AC091178.1-204ENST00000577328 366 ntTSL 4 BASIC6.06□□□□□ -1.44
NKX3-1Q99801 AC006441.4-202ENST00000577621 510 ntTSL 3 BASIC6.06□□□□□ -1.44
NKX3-1Q99801 AC130324.2-201ENST00000580873 638 ntTSL 2 BASIC6.06□□□□□ -1.44
NKX3-1Q99801 RN7SL657P-201ENST00000582431 293 ntBASIC6.06□□□□□ -1.44
NKX3-1Q99801 AC011447.3-202ENST00000593655 555 ntTSL 4 BASIC6.06□□□□□ -1.44
NKX3-1Q99801 AC007785.3-202ENST00000601033 518 ntTSL 3 BASIC6.06□□□□□ -1.44
NKX3-1Q99801 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC6.06□□□□□ -1.44
NKX3-1Q99801 AP005328.2-201ENST00000606879 657 ntTSL 3 BASIC6.06□□□□□ -1.44
NKX3-1Q99801 LINC01742-201ENST00000616333 628 ntTSL 3 BASIC6.06□□□□□ -1.44
NKX3-1Q99801 Metazoa_SRP.106-201ENST00000622471 296 ntBASIC6.06□□□□□ -1.44
NKX3-1Q99801 DLST-216ENST00000626051 252 ntTSL 5 BASIC6.06□□□□□ -1.44
NKX3-1Q99801 AC110079.2-202ENST00000629093 698 ntTSL 3 BASIC6.06□□□□□ -1.44
NKX3-1Q99801 FGL2-202ENST00000637771 989 ntBASIC6.06□□□□□ -1.44
NKX3-1Q99801 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
NKX3-1Q99801 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
NKX3-1Q99801 TDRD1-201ENST00000251864 4510 ntAPPRIS P2 TSL 1 (best) BASIC6.06□□□□□ -1.44
NKX3-1Q99801 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
NKX3-1Q99801 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC6.06□□□□□ -1.44
NKX3-1Q99801 SERPINB11-205ENST00000544088 1846 ntAPPRIS P1 TSL 2 BASIC6.06□□□□□ -1.44
NKX3-1Q99801 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
NKX3-1Q99801 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
NKX3-1Q99801 GPR1-203ENST00000437420 1557 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
NKX3-1Q99801 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
NKX3-1Q99801 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC6.05□□□□□ -1.44
NKX3-1Q99801 ADAL-203ENST00000428046 3514 ntTSL 2 BASIC6.05□□□□□ -1.44
NKX3-1Q99801 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
NKX3-1Q99801 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC6.05□□□□□ -1.44
NKX3-1Q99801 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC6.05□□□□□ -1.44
NKX3-1Q99801 HMGN2P46-204ENST00000409454 1923 ntTSL 2 BASIC6.05□□□□□ -1.44
NKX3-1Q99801 AC013562.1-201ENST00000519427 1722 ntTSL 2 BASIC6.05□□□□□ -1.44
NKX3-1Q99801 CA10-204ENST00000570565 2276 ntTSL 5 BASIC6.05□□□□□ -1.44
NKX3-1Q99801 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
NKX3-1Q99801 AL669831.5-218ENST00000591702 1873 ntBASIC6.05□□□□□ -1.44
NKX3-1Q99801 ERG-202ENST00000398897 4651 ntTSL 5 BASIC6.05□□□□□ -1.44
NKX3-1Q99801 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
NKX3-1Q99801 CA1-222ENST00000523953 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
NKX3-1Q99801 CREM-216ENST00000429130 1476 ntTSL 5 BASIC6.05□□□□□ -1.44
NKX3-1Q99801 FDFT1-208ENST00000525777 1472 ntTSL 2 BASIC6.05□□□□□ -1.44
NKX3-1Q99801 AL022323.4-201ENST00000623980 13120 ntBASIC6.05□□□□□ -1.44
NKX3-1Q99801 TRIM55-203ENST00000350034 1177 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
NKX3-1Q99801 RNA5SP396-201ENST00000364834 120 ntBASIC6.05□□□□□ -1.44
NKX3-1Q99801 RNA5SP172-201ENST00000365061 118 ntBASIC6.05□□□□□ -1.44
NKX3-1Q99801 LELP1-201ENST00000368747 523 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
NKX3-1Q99801 IGLJ2-201ENST00000390322 175 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
NKX3-1Q99801 RNA5SP231-201ENST00000410496 138 ntBASIC6.05□□□□□ -1.44
NKX3-1Q99801 SNX18P13-201ENST00000412442 529 ntBASIC6.05□□□□□ -1.44
NKX3-1Q99801 AL390840.1-201ENST00000420303 988 ntBASIC6.05□□□□□ -1.44
NKX3-1Q99801 AL591178.2-201ENST00000429191 461 ntTSL 3 BASIC6.05□□□□□ -1.44
NKX3-1Q99801 IGKV6D-21-201ENST00000436451 409 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
NKX3-1Q99801 AL161626.1-201ENST00000441480 490 ntBASIC6.05□□□□□ -1.44
NKX3-1Q99801 RPL21P33-201ENST00000444831 484 ntBASIC6.05□□□□□ -1.44
NKX3-1Q99801 LINC01105-205ENST00000450794 580 ntTSL 4 BASIC6.05□□□□□ -1.44
NKX3-1Q99801 BIRC6-AS1-201ENST00000455572 697 ntTSL 3 BASIC6.05□□□□□ -1.44
NKX3-1Q99801 RPSAP7-201ENST00000456871 885 ntBASIC6.05□□□□□ -1.44
NKX3-1Q99801 PSMA6P2-201ENST00000457574 686 ntBASIC6.05□□□□□ -1.44
NKX3-1Q99801 RN7SL797P-201ENST00000486314 297 ntBASIC6.05□□□□□ -1.44
NKX3-1Q99801 AC253576.1-201ENST00000511645 1156 ntBASIC6.05□□□□□ -1.44
NKX3-1Q99801 RN7SKP242-201ENST00000515967 289 ntBASIC6.05□□□□□ -1.44
NKX3-1Q99801 AC016144.1-201ENST00000548175 1087 ntBASIC6.05□□□□□ -1.44
NKX3-1Q99801 ORMDL2-203ENST00000548974 671 ntAPPRIS P1 TSL 2 BASIC6.05□□□□□ -1.44
NKX3-1Q99801 DISC1FP1-203ENST00000562678 796 ntTSL 3 BASIC6.05□□□□□ -1.44
NKX3-1Q99801 AP003071.2-201ENST00000562772 990 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
NKX3-1Q99801 RN7SL697P-201ENST00000582484 299 ntBASIC6.05□□□□□ -1.44
NKX3-1Q99801 MIR4470-201ENST00000583453 72 ntBASIC6.05□□□□□ -1.44
NKX3-1Q99801 METTL23-207ENST00000588783 1184 ntTSL 5 BASIC6.05□□□□□ -1.44
NKX3-1Q99801 AC008385.1-201ENST00000604421 355 ntBASIC6.05□□□□□ -1.44
NKX3-1Q99801 RPS28P1-201ENST00000604589 187 ntBASIC6.05□□□□□ -1.44
NKX3-1Q99801 AC063962.1-201ENST00000608199 521 ntBASIC6.05□□□□□ -1.44
NKX3-1Q99801 STARD13-AS-232ENST00000609137 882 ntTSL 5 BASIC6.05□□□□□ -1.44
NKX3-1Q99801 AC106795.5-201ENST00000623288 454 ntBASIC6.05□□□□□ -1.44
NKX3-1Q99801 AL009031.1-202ENST00000632370 886 ntTSL 3 BASIC6.05□□□□□ -1.44
NKX3-1Q99801 AIG1-209ENST00000629020 3636 ntTSL 2 BASIC6.05□□□□□ -1.44
NKX3-1Q99801 ADH4-212ENST00000629236 1974 ntTSL 5 BASIC6.05□□□□□ -1.44
NKX3-1Q99801 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC6.05□□□□□ -1.44
NKX3-1Q99801 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
NKX3-1Q99801 PRDX6-201ENST00000340385 1751 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
NKX3-1Q99801 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC6.05□□□□□ -1.44
NKX3-1Q99801 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
NKX3-1Q99801 ARL14EPL-201ENST00000601302 1914 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
NKX3-1Q99801 LINC02197-201ENST00000502659 2767 ntTSL 2 BASIC6.05□□□□□ -1.44
NKX3-1Q99801 ZNF502-201ENST00000296091 3270 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
NKX3-1Q99801 C1D-202ENST00000407324 1379 ntTSL 3 BASIC6.05□□□□□ -1.44
NKX3-1Q99801 MAPK10-379ENST00000642013 1385 ntBASIC6.05□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 93.1 ms