Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
PCDHGA1Q9Y5H4 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
PCDHGA1Q9Y5H4 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
PCDHGA1Q9Y5H4 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PCDHGA1Q9Y5H4 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PCDHGA1Q9Y5H4 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PCDHGA1Q9Y5H4 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PCDHGA1Q9Y5H4 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
PCDHGA1Q9Y5H4 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PCDHGA1Q9Y5H4 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PCDHGA1Q9Y5H4 LIN28AP1-201ENST00000429574 405 ntBASIC19.2■□□□□ 0.66
PCDHGA1Q9Y5H4 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC19.2■□□□□ 0.66
PCDHGA1Q9Y5H4 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC19.2■□□□□ 0.66
PCDHGA1Q9Y5H4 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC19.2■□□□□ 0.66
PCDHGA1Q9Y5H4 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.2■□□□□ 0.66
PCDHGA1Q9Y5H4 AP005242.2-201ENST00000580065 1175 ntBASIC19.2■□□□□ 0.66
PCDHGA1Q9Y5H4 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
PCDHGA1Q9Y5H4 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
PCDHGA1Q9Y5H4 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
PCDHGA1Q9Y5H4 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
PCDHGA1Q9Y5H4 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCDHGA1Q9Y5H4 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCDHGA1Q9Y5H4 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCDHGA1Q9Y5H4 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCDHGA1Q9Y5H4 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC19.19■□□□□ 0.66
PCDHGA1Q9Y5H4 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCDHGA1Q9Y5H4 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCDHGA1Q9Y5H4 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC19.19■□□□□ 0.66
PCDHGA1Q9Y5H4 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC19.19■□□□□ 0.66
PCDHGA1Q9Y5H4 EGLN1P1-201ENST00000531623 762 ntBASIC19.19■□□□□ 0.66
PCDHGA1Q9Y5H4 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC19.19■□□□□ 0.66
PCDHGA1Q9Y5H4 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC19.19■□□□□ 0.66
PCDHGA1Q9Y5H4 DGCR10-201ENST00000609839 495 ntBASIC19.19■□□□□ 0.66
PCDHGA1Q9Y5H4 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC19.19■□□□□ 0.66
PCDHGA1Q9Y5H4 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCDHGA1Q9Y5H4 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
PCDHGA1Q9Y5H4 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCDHGA1Q9Y5H4 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCDHGA1Q9Y5H4 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
PCDHGA1Q9Y5H4 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PCDHGA1Q9Y5H4 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.18■□□□□ 0.66
PCDHGA1Q9Y5H4 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCDHGA1Q9Y5H4 KRT8P20-201ENST00000423953 1409 ntBASIC19.18■□□□□ 0.66
PCDHGA1Q9Y5H4 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC19.18■□□□□ 0.66
PCDHGA1Q9Y5H4 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
PCDHGA1Q9Y5H4 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.18■□□□□ 0.66
PCDHGA1Q9Y5H4 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PCDHGA1Q9Y5H4 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PCDHGA1Q9Y5H4 LGALS8-AS1-201ENST00000487567 1457 ntBASIC19.18■□□□□ 0.66
PCDHGA1Q9Y5H4 ECEL1P1-201ENST00000373592 1742 ntBASIC19.18■□□□□ 0.66
PCDHGA1Q9Y5H4 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC19.18■□□□□ 0.66
PCDHGA1Q9Y5H4 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC19.18■□□□□ 0.66
PCDHGA1Q9Y5H4 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PCDHGA1Q9Y5H4 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC19.18■□□□□ 0.66
PCDHGA1Q9Y5H4 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC19.18■□□□□ 0.66
PCDHGA1Q9Y5H4 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PCDHGA1Q9Y5H4 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PCDHGA1Q9Y5H4 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.18■□□□□ 0.66
PCDHGA1Q9Y5H4 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PCDHGA1Q9Y5H4 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC19.18■□□□□ 0.66
PCDHGA1Q9Y5H4 AL024507.2-201ENST00000606070 2574 ntBASIC19.18■□□□□ 0.66
PCDHGA1Q9Y5H4 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.18■□□□□ 0.66
PCDHGA1Q9Y5H4 EP400NL-214ENST00000641289 2402 ntBASIC19.17■□□□□ 0.66
PCDHGA1Q9Y5H4 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHGA1Q9Y5H4 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHGA1Q9Y5H4 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHGA1Q9Y5H4 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHGA1Q9Y5H4 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHGA1Q9Y5H4 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.17■□□□□ 0.66
PCDHGA1Q9Y5H4 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHGA1Q9Y5H4 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
PCDHGA1Q9Y5H4 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHGA1Q9Y5H4 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHGA1Q9Y5H4 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHGA1Q9Y5H4 ATP5G1P1-201ENST00000448724 379 ntBASIC19.17■□□□□ 0.66
PCDHGA1Q9Y5H4 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC19.17■□□□□ 0.66
PCDHGA1Q9Y5H4 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC19.17■□□□□ 0.66
PCDHGA1Q9Y5H4 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHGA1Q9Y5H4 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC19.17■□□□□ 0.66
PCDHGA1Q9Y5H4 AL445675.2-201ENST00000620291 557 ntBASIC19.17■□□□□ 0.66
PCDHGA1Q9Y5H4 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHGA1Q9Y5H4 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHGA1Q9Y5H4 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHGA1Q9Y5H4 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHGA1Q9Y5H4 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHGA1Q9Y5H4 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC19.17■□□□□ 0.66
PCDHGA1Q9Y5H4 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
PCDHGA1Q9Y5H4 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
PCDHGA1Q9Y5H4 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
PCDHGA1Q9Y5H4 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
PCDHGA1Q9Y5H4 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHGA1Q9Y5H4 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHGA1Q9Y5H4 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC19.16■□□□□ 0.66
PCDHGA1Q9Y5H4 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHGA1Q9Y5H4 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC19.16■□□□□ 0.66
PCDHGA1Q9Y5H4 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
PCDHGA1Q9Y5H4 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHGA1Q9Y5H4 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
PCDHGA1Q9Y5H4 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
PCDHGA1Q9Y5H4 TSPY14P-201ENST00000303979 915 ntBASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms